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Summary of This Tissue Information (All List)

Organism Arabidopsis thaliana
Tissue Seedlings
Total Entry Count 14

Entry Genes (14 entries)

LocusGene modelDescription
AT1G77770
(UniProt:Q84K51_ARATH)
AT1G77770.1protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, RING-type (InterPro:IPR001841), Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G08460.2); Has 156 Blast hits to 147 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 

(UniProt:Q84K51_ARATH)
AT1G77770.2protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, RING-type (InterPro:IPR001841), Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G08460.2); Has 156 Blast hits to 147 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 
AT2G42870
(UniProt:Q9SJH0_ARATH)
AT2G42870.1Encodes PHYTOCHROME RAPIDLY REGULATED1 (PAR1), an atypical basic helix-loop-helix (bHLP) protein. Closely related to PAR2 (At3g58850). Up regulated after simulated shade perception. Acts in the nucleus to control plant development and as a negative regulator of shade avoidance response. Functions as transcriptional repressor of auxin-responsive genes SAUR15 (AT4G38850) and SAUR68 (AT1G29510). 
AT3G05250
(UniProt:Q8GYA2_ARATH)
AT3G05250.1zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (TAIR:AT1G67180.1); Has 423 Blast hits to 420 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 211; Fungi - 17; Plants - 100; Viruses - 61; Other Eukaryotes - 34 (source: NCBI BLink). 
AT3G06330
(UniProt:Q9SQT6_ARATH)
AT3G06330.1zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G18760.1); Has 1171 Blast hits to 1014 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 537; Fungi - 74; Plants - 331; Viruses - 4; Other Eukaryotes - 225 (source: NCBI BLink). 

(UniProt:Q9SQT6_ARATH)
AT3G06330.2zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G18760.1); Has 1171 Blast hits to 1014 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 537; Fungi - 74; Plants - 331; Viruses - 4; Other Eukaryotes - 225 (source: NCBI BLink). 

(UniProt:Q9SQT6_ARATH)
AT3G06330.3zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G18760.1); Has 1171 Blast hits to 1014 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 537; Fungi - 74; Plants - 331; Viruses - 4; Other Eukaryotes - 225 (source: NCBI BLink). 
AT3G47160
(UniProt:Q9SD57_ARATH)
AT3G47160.1protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G58787.1); Has 864 Blast hits to 863 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 394; Fungi - 32; Plants - 173; Viruses - 107; Other Eukaryotes - 158 (source: NCBI BLink). 
AT4G02075
(UniProt:Q9XF50_ARATH)
AT4G02075.1pitchoun 1 (PIT1); FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G02960.4); Has 1098 Blast hits to 1097 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 564; Fungi - 66; Plants - 302; Viruses - 27; Other Eukaryotes - 139 (source: NCBI BLink). 
AT4G11250
(UniProt:Q9SUT6_ARATH)
AT4G11250.1AGL52; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL78 (AGAMOUS-LIKE 78); transcription factor (TAIR:AT5G65330.1); Has 389 Blast hits to 384 proteins in 97 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 287; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink). 

(UniProt:Q9SUT6_ARATH)
AT4G11250.1AGL52; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL78 (AGAMOUS-LIKE 78); transcription factor (TAIR:AT5G65330.1); Has 389 Blast hits to 384 proteins in 97 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 287; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink). 
AT4G14365
(UniProt:Q9FPH0_ARATH)
AT4G14365.1zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein (TAIR:AT3G23280.1); Has 25331 Blast hits to 12607 proteins in 594 species: Archae - 31; Bacteria - 1429; Metazoa - 13411; Fungi - 969; Plants - 625; Viruses - 441; Other Eukaryotes - 8425 (source: NCBI BLink). 
AT4G17090
(UniProt:Q9SMW0_ARATH)
AT4G17090.1Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected). 
AT5G38070
(UniProt:Q9LS14_ARATH)
AT5G38070.1zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G01275.2); Has 1214 Blast hits to 1214 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 631; Fungi - 77; Plants - 303; Viruses - 20; Other Eukaryotes - 183 (source: NCBI BLink). 


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