PlantPromoterDB promoter information of AT1G01090
Summary of Gene (AT1G01090)
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Overview
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Focused view (chromosome 1: 50166-48967)
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Genome position
from initiation codon AT1G01100.1 AT1G01100.2 AT1G01100.3 AT1G01100.4 TSS from cDNA TSS information AT1G01090 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G01090
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 49285 | -119 |
| TSS clone | C | clone | - | 49284 | -118 |
| TSS clone | T | clone | - | 49282 | -116 |
| TSS clone | G | clone | - | 49279 | -113 |
| TSS clone | C | clone | - | 49278 | -112 |
| TSS clone | A | clone | - | 49272 | -106 |
| TSS clone peak | T | clone | - | 49271 | -105 |
| TSS clone | C | clone | - | 49205 | -39 |
| TSS clone | T | clone | - | 49196 | -30 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTCTCTTT | - | 49238 | 49245 | -72 | -79 |
| Y Patch | TTCTCTCC | - | 49257 | 49264 | -91 | -98 |
| Y Patch | CCTCCTCT | - | 49280 | 49287 | -114 | -121 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GTGGGTCC | - | 49358 | 49365 | -192 | -199 | |||
| AtREG523 | GTGGGTCC | PPDB Motif | GGGACCC | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||