PlantPromoterDB promoter information of AT1G01140.3
Summary of Gene (AT1G01140.3)
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Overview
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Focused view (chromosome 1: 68512-67313)
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Genome position
from initiation codon AT1G01140.2 TSS from cDNA TSS information AT1G01140.3 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G01140.3
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 4 | - | 67625 | -113 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 67625 | -113 |
| TSS clone | G | clone | - | 67624 | -112 |
| TSS clone | A | clone | - | 67619 | -107 |
| TSS clone | T | clone | - | 67586 | -74 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTTTCTCTC | - | 67629 | 67637 | -117 | -125 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GCGCGTGA | - | 67674 | 67681 | -162 | -169 | |||
| AtREG395 | GCGCGTGA | PPDB Motif | ACGCGC | PLACE Motif | |||||
| REG | GGGACCCAC | - | 67687 | 67695 | -175 | -183 | |||
| AtREG615 | GGGACCCA | ABA | PPDB Motif | GGGACCC | PLACE Motif | ||||
| AtREG523 | GGACCCAC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| REG | TACGTGGCAT | - | 67698 | 67707 | -186 | -195 | |||
| AtREG413 | TACGTGGC | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | ||||
| AtREG379 | ACGTGGCA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG448 | CGTGGCAT | ABA, DREB1Aox | PPDB Motif | PLACE Motif | GCCAC | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||