Summary of Gene (AT1G01240)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT1G01240 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | + | 99922 | -761 |
TSS clone peak | C | clone | + | 100048 | -635 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AACACGTGTT | + | 99785 | 99794 | -898 | -889 | |||
AtREG590 | AACACGTGTT | ABA, JA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG  | |||
REG | GTGTCGTTTT | + | 99846 | 99855 | -837 | -828 | |||
AtREG527 | GTGTCGTT | DREB1Aox | PPDB Motif |   | PLACE Motif |   | |||
AtREG569 | TGTCGTTT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG520 | GTCGTTTT | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | GGCCTATT | + | 97347 | 97354 | AT1G01230.1 | ||||
AtREG424 | GGCCTATT | PPDB Motif |   | PLACE Motif |   |