PlantPromoterDB promoter information of AT1G01470
Summary of Gene (AT1G01470)
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Overview
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Focused view (chromosome 1: 173826-172627)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G01470 5'->3' (-) Promoter sequence AT1G01471.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G01470
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 23 | - | 172884 | -58 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 172942 | -116 |
| TSS clone | A | clone | - | 172940 | -114 |
| TSS clone | A | clone | - | 172886 | -60 |
| TSS clone | C | clone | - | 172879 | -53 |
| TSS clone | A | clone | - | 172877 | -51 |
| TSS clone | T | clone | - | 172873 | -47 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TTTATATATATATTC | - | 172905 | 172919 | -79 | -93 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GACCGACT | - | 172946 | 172953 | -120 | -127 | |||
| AtREG638 | GACCGACT | DREB1Aox, ABA | PPDB Motif | CCGAC | PLACE Motif | CCGAC, RCCGAC | |||
| REG | TCACACGT | - | 172989 | 172996 | -163 | -170 | |||
| AtREG588 | TCACACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| REG | AGACACGTA | - | 173032 | 173040 | -206 | -214 | |||
| AtREG470 | AGACACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG557 | GACACGTA | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||