PlantPromoterDB promoter information of AT1G01550
Summary of Gene (AT1G01550)
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Overview
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Focused view (chromosome 1: 199526-200725)
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Genome position
from initiation codon AT1G01550.2 TSS from cDNA TSS information AT1G01550 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G01550
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 17 | + | 199655 | -871 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 199648 | -878 |
| TSS clone | A | clone | + | 199663 | -863 |
| TSS clone | G | clone | + | 199675 | -851 |
| TSS clone | T | clone | + | 199718 | -808 |
| TSS clone | C | clone | + | 199719 | -807 |
| TSS clone | T | clone | + | 199720 | -806 |
| TSS clone | T | clone | + | 199725 | -801 |
| TSS clone | T | clone | + | 199792 | -734 |
| TSS clone | T | clone | + | 199852 | -674 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TTGACTTT | + | 199457 | 199464 | -1069 | -1062 | |||
| AtREG632 | TTGACTTT | PPDB Motif | PLACE Motif | TTGAC | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||