PlantPromoterDB promoter information of AT1G01650

Summary of Gene (AT1G01650)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G01650 TAIR NCBI
Gene model	AT1G01650
Description	aspartic-type endopeptidase/ peptidase; FUNCTIONS IN: peptidase activity, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22B, signal peptide peptidase (InterPro:IPR007369); BEST Arabidopsis thaliana protein match is: protease-associated (PA) domain-containing protein (TAIR:AT1G63690.1); Has 1108 Blast hits to 1084 proteins in 196 species: Archae - 0; Bacteria - 119; Metazoa - 534; Fungi - 104; Plants - 174; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).

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Overview

Focused view (chromosome 1: 238647-237448)

`Genome position from initiation codon` `AT1G01650.1 AT1G01650.2 TSS from cDNA TSS information AT1G01650 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G01650

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 2 - 237796 -149

TSS peak T 13 - 236771 876

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	2	-	237796	-149
TSS peak	`T`	13	-	236771	876

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone T clone - 237817 -170

TSS clone T clone - 237753 -106

TSS clone T clone - 237744 -97

TSS clone C clone - 237734 -87

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`T`	clone	-	237817	-170
TSS clone	`T`	clone	-	237753	-106
TSS clone	`T`	clone	-	237744	-97
TSS clone	`C`	clone	-	237734	-87

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TTCCCTCTTCTCTTCTCTTCTCTCTCTCTC - 237750 237779 -103 -132

Y Patch CATCTCTCTCTCTCCC - 237797 237812 -150 -165

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TTCCCTCTTCTCTTCTCTTCTCTCTCTCTC`	-	237750	237779	-103	-132
Y Patch	`CATCTCTCTCTCTCCC`	-	237797	237812	-150	-165
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TTGGCCCAAC - 236950 236959 697 688

AtREG484 TTGGCCCA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG420 TGGCCCAA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG449   GGCCCAAC PPDB Motif GCCCA, CCAACGG PLACE Motif GGGCC, TGGGCY

REG CAGCGTTTTA - 237850 237859 -203 -212

AtREG626 CAGCGTTT   PPDB Motif AAACG(C/G) PLACE Motif

AtREG564   GCGTTTTA PPDB Motif AAACG(C/G) PLACE Motif

REG AAAGTCAA - 237863 237870 -216 -223

AtREG632 AAAGTCAA PPDB Motif PLACE Motif TTGAC

REG CACGCGCC - 237897 237904 -250 -257

AtREG486 CACGCGCC PPDB Motif ACGCGC PLACE Motif

REG ACACGCGT - 237907 237914 -260 -267

AtREG536 ACACGCGT ABA, Drought PPDB Motif PLACE Motif ACACNNG

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TTGGCCCAAC`		-	236950	236959	697	688
	AtREG484	`TTGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG420	`TGGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG449	`GGCCCAAC`		PPDB Motif	`GCCCA, CCAACGG`	PLACE Motif	`GGGCC, TGGGCY`
REG	`CAGCGTTTTA`		-	237850	237859	-203	-212
	AtREG626	`CAGCGTTT`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
	AtREG564	`GCGTTTTA`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
REG	`AAAGTCAA`		-	237863	237870	-216	-223
	AtREG632	`AAAGTCAA`		PPDB Motif		PLACE Motif	`TTGAC`
REG	`CACGCGCC`		-	237897	237904	-250	-257
	AtREG486	`CACGCGCC`		PPDB Motif	`ACGCGC`	PLACE Motif
REG	`ACACGCGT`		-	237907	237914	-260	-267
	AtREG536	`ACACGCGT`	ABA, Drought	PPDB Motif		PLACE Motif	`ACACNNG`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None