PlantPromoterDB promoter information of AT1G01725.1

Summary of Gene (AT1G01725.1)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G01725 TAIR NCBI
Gene model	AT1G01725.1
Description	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 10 Blast hits to 10 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

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Overview

Focused view (chromosome 1: 271735-270536)

`Genome position from initiation codon` `TSS from cDNA TSS information AT1G01725.1 5'->3' (-) Promoter sequence AT1G01730.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G01725.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 8 + 270998 AT1G01730.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	8	+	270998	AT1G01730.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone T clone + 270913 AT1G01730.1

TSS clone T clone + 270956 AT1G01730.1

TSS clone T clone + 270970 AT1G01730.1

TSS clone A clone + 270992 AT1G01730.1

TSS clone A clone + 270999 AT1G01730.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`T`	clone	+	270913	AT1G01730.1
TSS clone	`T`	clone	+	270956	AT1G01730.1
TSS clone	`T`	clone	+	270970	AT1G01730.1
TSS clone	`A`	clone	+	270992	AT1G01730.1
TSS clone	`A`	clone	+	270999	AT1G01730.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTCTTTC + 270966 270973 AT1G01730.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTCTTTC`	+	270966	270973	AT1G01730.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG AAAACGACAC + 270825 270834 AT1G01730.1

AtREG520 AAAACGAC   PPDB Motif PLACE Motif

AtREG569 AAACGACA PPDB Motif PLACE Motif

AtREG527   AACGACAC DREB1Aox PPDB Motif PLACE Motif

REG TGCCGTTTT + 270862 270870 AT1G01730.1

AtREG500 TGCCGTTT PPDB Motif AAACG(C/G) PLACE Motif

AtREG531 GCCGTTTT PPDB Motif AAACG(C/G) PLACE Motif

REG ATATGGGCCCAGAAAGGCCCAAAC + 270883 270906 AT1G01730.1

AtREG432 ATATGGGC                 PPDB Motif GCCCA PLACE Motif

AtREG364 TATGGGCC                PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG391   ATGGGCCC               PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG422    TGGGCCCA              PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG363     GGGCCCAG             PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG397      GGCCCAGA            PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG359             AAAGGCCC     PPDB Motif GCCCA PLACE Motif GGGCC

AtREG353              AAGGCCCA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356               AGGCCCAA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG373                GGCCCAAA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG474                 GCCCAAAC PPDB Motif GCCCA PLACE Motif

REG ACGGCGTCGTTTT + 270923 270935 AT1G01730.1

AtREG540 ACGGCGTC      PPDB Motif PLACE Motif

AtREG537   GGCGTCGT    PPDB Motif PLACE Motif

AtREG439    GCGTCGTT   PPDB Motif PLACE Motif

AtREG415     CGTCGTTT PPDB Motif PLACE Motif

AtREG520      GTCGTTTT PPDB Motif PLACE Motif