PlantPromoterDB promoter information of AT1G01920.1

Summary of Gene (AT1G01920.1)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G01920 TAIR NCBI
Gene model	AT1G01920.1
Description	SET domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative (TAIR:AT1G14030.1); Has 423 Blast hits to 420 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 140; Fungi - 142; Plants - 99; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).

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Overview

Focused view (chromosome 1: 315204-316403)

`Genome position from initiation codon` `AT1G01920.2 TSS from cDNA TSS information AT1G01920.1 5'->3' (+) Promoter sequence AT1G01910.1 AT1G01910.2 AT1G01910.3 AT1G01910.4 AT1G01910.5 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G01920.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone T clone + 316128 -76

TSS clone peak C clone + 316172 -32

TSS clone C clone + 316177 -27

TSS clone G clone + 316187 -17

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`T`	clone	+	316128	-76
TSS clone peak	`C`	clone	+	316172	-32
TSS clone	`C`	clone	+	316177	-27
TSS clone	`G`	clone	+	316187	-17

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CCCTCTCT + 316151 316158 -53 -46

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CCCTCTCT`	+	316151	316158	-53	-46
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG CCGGTTCAA + 315941 315949 -263 -255

AtREG480 CCGGTTCA PPDB Motif AACCG(G/A) PLACE Motif

AtREG640 CGGTTCAA PPDB Motif AACCG(G/A) PLACE Motif

REG ATAAGCCCATA + 316082 316092 -122 -112

AtREG462 ATAAGCCC    PPDB Motif GCCCA PLACE Motif

AtREG426 TAAGCCCA   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378   AAGCCCAT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG477    AGCCCATA PPDB Motif GCCCA PLACE Motif TGGGCY

REG AAAAGCCCAC + 316094 316103 -110 -101

AtREG409 AAAAGCCC   PPDB Motif GCCCA PLACE Motif

AtREG376 AAAGCCCA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG518   AAGCCCAC PPDB Motif GCCCA PLACE Motif TGGGCY

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`CCGGTTCAA`		+	315941	315949	-263	-255
	AtREG480	`CCGGTTCA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG640	`CGGTTCAA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`ATAAGCCCATA`		+	316082	316092	-122	-112
	AtREG462	`ATAAGCCC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG426	`TAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG378	`AAGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG477	`AGCCCATA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
REG	`AAAAGCCCAC`		+	316094	316103	-110	-101
	AtREG409	`AAAAGCCC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG376	`AAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG518	`AAGCCCAC`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 10 - 315900 AT1G01910.1, AT1G01910.2, AT1G01910.3, AT1G01910.4, AT1G01910.5

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	10	-	315900	AT1G01910.1, AT1G01910.2, AT1G01910.3, AT1G01910.4, AT1G01910.5

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone G clone - 315902 AT1G01910.1, AT1G01910.2, AT1G01910.3, AT1G01910.4, AT1G01910.5

TSS clone T clone - 315901 AT1G01910.1, AT1G01910.2, AT1G01910.3, AT1G01910.4, AT1G01910.5

TSS clone A clone - 315900 AT1G01910.1, AT1G01910.2, AT1G01910.3, AT1G01910.4, AT1G01910.5

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`G`	clone	-	315902	AT1G01910.1, AT1G01910.2, AT1G01910.3, AT1G01910.4, AT1G01910.5
TSS clone	`T`	clone	-	315901	AT1G01910.1, AT1G01910.2, AT1G01910.3, AT1G01910.4, AT1G01910.5
TSS clone	`A`	clone	-	315900	AT1G01910.1, AT1G01910.2, AT1G01910.3, AT1G01910.4, AT1G01910.5

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TTGAACCGG - 315941 315949 AT1G01910.1, AT1G01910.2, AT1G01910.3, AT1G01910.4, AT1G01910.5

AtREG640 TTGAACCG PPDB Motif AACCG(G/A) PLACE Motif

AtREG480 TGAACCGG PPDB Motif AACCG(G/A) PLACE Motif

REG TATGGGCTTAT - 316082 316092 AT1G01910.1, AT1G01910.2, AT1G01910.3, AT1G01910.4, AT1G01910.5

AtREG477 TATGGGCT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378 ATGGGCTT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG426   TGGGCTTA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG462    GGGCTTAT PPDB Motif GCCCA PLACE Motif

REG GTGGGCTTTT - 316094 316103 AT1G01910.1, AT1G01910.2, AT1G01910.3, AT1G01910.4, AT1G01910.5

AtREG518 GTGGGCTT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG376 TGGGCTTT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG409   GGGCTTTT PPDB Motif GCCCA PLACE Motif

REG TTTAACCG - 316162 316169 AT1G01910.1, AT1G01910.2, AT1G01910.3, AT1G01910.4, AT1G01910.5

AtREG645 TTTAACCG PPDB Motif AACCG(G/A) PLACE Motif CNGTTR