PlantPromoterDB promoter information of AT1G02100.3

Summary of Gene (AT1G02100.3)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G02100 TAIR NCBI
Gene model	AT1G02100.3
Description	leucine carboxyl methyltransferase family protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Leucine carboxyl methyltransferase, LCTM1 1 (InterPro:IPR016651), Leucine carboxyl methyltransferase (InterPro:IPR007213); Has 455 Blast hits to 446 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 165; Fungi - 191; Plants - 22; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).

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Overview

Focused view (chromosome 1: 388876-390075)

`Genome position from initiation codon` `AT1G02100.1 AT1G02100.2 TSS from cDNA TSS information AT1G02100.3 5'->3' (+) Promoter sequence AT1G02090.1 AT1G02090.2 AT1G02090.3 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G02100.3

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 4 + 389873 -3

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	4	+	389873	-3

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone G clone + 389816 -60

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`G`	clone	+	389816	-60

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TTCTTCTTCCTTC + 389839 389851 -37 -25

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TTCTTCTTCCTTC`	+	389839	389851	-37	-25
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TTTCCGGT + 389585 389592 -291 -284

AtREG644 TTTCCGGT PPDB Motif AACCG(G/A) PLACE Motif

REG TAATTGGGCTCA + 389729 389740 -147 -136

AtREG600 TAATTGGG     PPDB Motif GCCCA PLACE Motif

AtREG418 AATTGGGC    PPDB Motif GCCCA PLACE Motif

AtREG402   ATTGGGCT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG533    TTGGGCTC PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG485     TGGGCTCA PPDB Motif GCCCA PLACE Motif TGGGCY

REG TCTGGGCCAA + 389753 389762 -123 -114

AtREG397 TCTGGGCC   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG458 CTGGGCCA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG484   TGGGCCAA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

REG AACCGCGT + 389786 389793 -90 -83

AtREG441 AACCGCGT Drought PPDB Motif PLACE Motif

REG TGAGCCCAAAC + 389798 389808 -78 -68

AtREG485 TGAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG533 GAGCCCAA   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG469   AGCCCAAA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG474    GCCCAAAC PPDB Motif GCCCA PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TTTCCGGT`		+	389585	389592	-291	-284
	AtREG644	`TTTCCGGT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`TAATTGGGCTCA`		+	389729	389740	-147	-136
	AtREG600	`TAATTGGG`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG418	`AATTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG402	`ATTGGGCT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG533	`TTGGGCTC`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG485	`TGGGCTCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
REG	`TCTGGGCCAA`		+	389753	389762	-123	-114
	AtREG397	`TCTGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG458	`CTGGGCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG484	`TGGGCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
REG	`AACCGCGT`		+	389786	389793	-90	-83
	AtREG441	`AACCGCGT`	Drought	PPDB Motif		PLACE Motif
REG	`TGAGCCCAAAC`		+	389798	389808	-78	-68
	AtREG485	`TGAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG533	`GAGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG469	`AGCCCAAA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG474	`GCCCAAAC`		PPDB Motif	`GCCCA`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 5 - 389650 AT1G02090.2, AT1G02090.1, AT1G02090.3

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	5	-	389650	AT1G02090.2, AT1G02090.1, AT1G02090.3

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone - 389643 AT1G02090.2, AT1G02090.1, AT1G02090.3

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	-	389643	AT1G02090.2, AT1G02090.1, AT1G02090.3

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box AATATAAAAA - 389671 389680 AT1G02090.1, AT1G02090.2, AT1G02090.3

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`AATATAAAAA`	-	389671	389680	AT1G02090.1, AT1G02090.2, AT1G02090.3
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TGAGCCCAATTA - 389729 389740 AT1G02090.1, AT1G02090.2, AT1G02090.3

AtREG485 TGAGCCCA     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG533 GAGCCCAA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG402   AGCCCAAT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG418    GCCCAATT PPDB Motif GCCCA PLACE Motif

AtREG600     CCCAATTA PPDB Motif GCCCA PLACE Motif

REG TTGGCCCAGA - 389753 389762 AT1G02090.1, AT1G02090.2, AT1G02090.3

AtREG484 TTGGCCCA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG458 TGGCCCAG PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG397   GGCCCAGA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

REG ACGCGGTT - 389786 389793 AT1G02090.1, AT1G02090.2, AT1G02090.3

AtREG441 ACGCGGTT Drought PPDB Motif PLACE Motif

REG GTTTGGGCTCA - 389798 389808 AT1G02090.1, AT1G02090.2, AT1G02090.3

AtREG474 GTTTGGGC    PPDB Motif GCCCA PLACE Motif

AtREG469 TTTGGGCT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG533   TTGGGCTC PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG485    TGGGCTCA PPDB Motif GCCCA PLACE Motif TGGGCY

REG TCGTCGTT - 389918 389925 AT1G02090.1, AT1G02090.2, AT1G02090.3

AtREG648 TCGTCGTT PPDB Motif PLACE Motif