PlantPromoterDB promoter information of AT1G02190

Summary of Gene (AT1G02190)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G02190 TAIR NCBI
Gene model	AT1G02190
Description	CER1 protein, putative; FUNCTIONS IN: oxidoreductase activity, iron ion binding, catalytic activity; INVOLVED IN: oxidation reduction, fatty acid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: catalytic/ iron ion binding / oxidoreductase (TAIR:AT2G37700.1); Has 1933 Blast hits to 1933 proteins in 393 species: Archae - 0; Bacteria - 634; Metazoa - 240; Fungi - 255; Plants - 298; Viruses - 2; Other Eukaryotes - 504 (source: NCBI BLink).

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Overview

Focused view (chromosome 1: 414154-415353)

`Genome position from initiation codon` `AT1G02190.1 AT1G02190.2 TSS from cDNA TSS information AT1G02190 5'->3' (+) Promoter sequence AT1G02180.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G02190

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone peak T clone + 415075 -79

TSS clone peak A clone + 415079 -75

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone peak	`T`	clone	+	415075	-79
TSS clone peak	`A`	clone	+	415079	-75

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box CCTCTATATAAT + 415040 415051 -114 -103

Y Patch CTTCCTTC + 415108 415115 -46 -39

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`CCTCTATATAAT`	+	415040	415051	-114	-103
Y Patch	`CTTCCTTC`	+	415108	415115	-46	-39
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TAAATGGGC + 414797 414805 -357 -349

AtREG443 TAAATGGG PPDB Motif GCCCA PLACE Motif

AtREG386 AAATGGGC PPDB Motif GCCCA PLACE Motif

REG TGGGCCAAT + 414826 414834 -328 -320

AtREG484 TGGGCCAA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG446 GGGCCAAT CK PPDB Motif GCCCA PLACE Motif GGGCC

REG GCCCATTG + 414888 414895 -266 -259

AtREG551 GCCCATTG PPDB Motif GCCCA PLACE Motif

REG GTAAACCGG + 414975 414983 -179 -171

AtREG519 GTAAACCG PPDB Motif AACCG(G/A) PLACE Motif

AtREG412 TAAACCGG PPDB Motif AACCG(G/A) PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TAAATGGGC`		+	414797	414805	-357	-349
	AtREG443	`TAAATGGG`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG386	`AAATGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`TGGGCCAAT`		+	414826	414834	-328	-320
	AtREG484	`TGGGCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG446	`GGGCCAAT`	CK	PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
REG	`GCCCATTG`		+	414888	414895	-266	-259
	AtREG551	`GCCCATTG`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`GTAAACCGG`		+	414975	414983	-179	-171
	AtREG519	`GTAAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG412	`TAAACCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 2 - 414641 AT1G02180.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	2	-	414641	AT1G02180.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone - 414645 AT1G02180.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	-	414645	AT1G02180.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTCCTTTC - 414603 414610 AT1G02180.1

Y Patch TTTCTTCTC - 414679 414687 AT1G02180.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTCCTTTC`	-	414603	414610	AT1G02180.1
Y Patch	`TTTCTTCTC`	-	414679	414687	AT1G02180.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CAAAGCCCAATAA - 414705 414717 AT1G02180.1

AtREG559 CAAAGCCC      PPDB Motif GCCCA PLACE Motif

AtREG376 AAAGCCCA     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407   AAGCCCAA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG402    AGCCCAAT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG355     GCCCAATA PPDB Motif GCCCA PLACE Motif

AtREG417      CCCAATAA PPDB Motif GCCCA PLACE Motif

REG GAGCCCAACA - 414724 414733 AT1G02180.1

AtREG533 GAGCCCAA   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG574 AGCCCAAC PPDB Motif GCCCA, CCAACGG PLACE Motif TGGGCY

AtREG543   GCCCAACA PPDB Motif GCCCA PLACE Motif CAACA

REG GCCCATTTA - 414797 414805 AT1G02180.1

AtREG386 GCCCATTT PPDB Motif GCCCA PLACE Motif

AtREG443 CCCATTTA PPDB Motif GCCCA PLACE Motif

REG ATTGGCCCA - 414826 414834 AT1G02180.1

AtREG446 ATTGGCCC CK PPDB Motif GCCCA PLACE Motif GGGCC

AtREG484 TTGGCCCA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

REG CAATGGGC - 414888 414895 AT1G02180.1

AtREG551 CAATGGGC PPDB Motif GCCCA PLACE Motif