Summary of Gene (AT1G02800)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT1G02800 5'->3' (-) Promoter sequence AT1G02813.1
AT1G02816.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 616191 | -88 |
TSS clone peak | G | clone | - | 616187 | -84 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | T | clone | + | 621462 | AT1G02816.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CGTCTCTCCC | + | 621496 | 621505 | AT1G02816.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AGCCCAAA | + | 621169 | 621176 | AT1G02816.1 | ||||
AtREG469 | AGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
REG | TATAGGCCTAT | + | 621199 | 621209 | AT1G02816.1 | ||||
AtREG487 | TATAGGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG649 | ATAGGCCTAT | PPDB Motif |   | PLACE Motif |   | ||||
REG | TTAAAGCCCATGGGCCTTAA | + | 621219 | 621238 | AT1G02816.1 | ||||
AtREG545 | TTAAAGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG365 | TAAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG376 | AAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG378 | AAGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG591 | CCCATGGG | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
AtREG507 | GCCCATGGGC | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
AtREG504 | CATGGGCC | PPDB Motif | GCCCA, CCATGG  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG354 | ATGGGCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG353 | TGGGCCTT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG351 | GGGCCTTA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG416 | GGCCTTAA | PPDB Motif |   | PLACE Motif |   | ||||
REG | TAAGCCCAAAATTAGCCCAT | + | 621327 | 621346 | AT1G02816.1 | ||||
AtREG426 | TAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | AAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG469 | AGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG529 | GCCCAAAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG571 | TTAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG581 | TAGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
REG | ATGGGCTTA | + | 621394 | 621402 | AT1G02816.1 | ||||
AtREG378 | ATGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG426 | TGGGCTTA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
REG | ATGACACGTGTCG | + | 621406 | 621418 | AT1G02816.1 | ||||
AtREG438 | ATGACACG | ABA | PPDB Motif |   | PLACE Motif |   | |||
AtREG389 | TGACACGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC  | |||
AtREG366 | GACACGTGTC | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC  | |||
AtREG478 | ACGTGTCG | ABA, DREB1Aox, Drought | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC  |