PlantPromoterDB promoter information of AT1G02800.1

Summary of Gene (AT1G02800.1)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G02800 TAIR NCBI
Gene model	AT1G02800.1
Description	Encodes a protein with similarity to endo-1,4-b-glucanases and is a member of Glycoside Hydrolase Family 9. CEL2 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia.

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Overview

Focused view (chromosome 1: 610553-609354)

`Genome position from initiation codon` `AT1G02780.1 AT1G02790.1 TSS from cDNA TSS information AT1G02800.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G02800.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone peak A clone - 616191 -88

TSS clone peak G clone - 616187 -84

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone peak	`A`	clone	-	616191	-88
TSS clone peak	`G`	clone	-	616187	-84

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 251 - 609434 AT1G02780.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	251	-	609434	AT1G02780.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone - 609434 AT1G02780.1

TSS clone G clone - 609433 AT1G02780.1

TSS clone C clone - 609430 AT1G02780.1

TSS clone T clone - 609429 AT1G02780.1

TSS clone C clone - 609427 AT1G02780.1

TSS clone C clone - 609425 AT1G02780.1

TSS clone C clone - 609424 AT1G02780.1

TSS clone C clone - 609422 AT1G02780.1

TSS clone A clone - 609418 AT1G02780.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	-	609434	AT1G02780.1
TSS clone	`G`	clone	-	609433	AT1G02780.1
TSS clone	`C`	clone	-	609430	AT1G02780.1
TSS clone	`T`	clone	-	609429	AT1G02780.1
TSS clone	`C`	clone	-	609427	AT1G02780.1
TSS clone	`C`	clone	-	609425	AT1G02780.1
TSS clone	`C`	clone	-	609424	AT1G02780.1
TSS clone	`C`	clone	-	609422	AT1G02780.1
TSS clone	`A`	clone	-	609418	AT1G02780.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box GTATATAAATT - 609457 609467 AT1G02780.1

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`GTATATAAATT`	-	609457	609467	AT1G02780.1
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG ACCCTAGA - 609477 609484 AT1G02780.1

AtREG658 ACCCTAGA PPDB Motif ACCCT PLACE Motif

REG TTAAAGCCCAATAT - 609504 609517 AT1G02780.1

AtREG545 TTAAAGCC       PPDB Motif PLACE Motif

AtREG365 TAAAGCCC      PPDB Motif GCCCA PLACE Motif

AtREG376   AAAGCCCA     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407    AAGCCCAA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG402     AGCCCAAT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG355      GCCCAATA PPDB Motif GCCCA PLACE Motif

AtREG509       CCCAATAT PPDB Motif PLACE Motif

REG AAAAGCCCATTT - 609523 609534 AT1G02780.1

AtREG409 AAAAGCCC     PPDB Motif GCCCA PLACE Motif

AtREG376 AAAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378   AAGCCCAT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG372    AGCCCATT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG386     GCCCATTT PPDB Motif GCCCA PLACE Motif

REG TAATTGGG - 609540 609547 AT1G02780.1

AtREG600 TAATTGGG PPDB Motif GCCCA PLACE Motif