Summary of Gene (AT1G02800.1)
|
Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT1G02800.1 5'->3' (-) Promoter sequence AT1G02840.1
AT1G02840.2 AT1G02840.3 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 616191 | -88 |
TSS clone peak | G | clone | - | 616187 | -84 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | C | 2 | + | 626785 | AT1G02840.1, AT1G02840.2, AT1G02840.3 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | C | clone | + | 626742 | AT1G02840.1, AT1G02840.2, AT1G02840.3 |
TSS clone | C | clone | + | 626743 | AT1G02840.1, AT1G02840.2, AT1G02840.3 |
TSS clone | C | clone | + | 626778 | AT1G02840.1, AT1G02840.2, AT1G02840.3 |
TSS clone | T | clone | + | 626779 | AT1G02840.1, AT1G02840.2, AT1G02840.3 |
TSS clone | A | clone | + | 626780 | AT1G02840.1, AT1G02840.2, AT1G02840.3 |
TSS clone | A | clone | + | 626781 | AT1G02840.1, AT1G02840.2, AT1G02840.3 |
TSS clone | A | clone | + | 626789 | AT1G02840.1, AT1G02840.2, AT1G02840.3 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | CACGTGAC | + | 626721 | 626728 | AT1G02840.1, AT1G02840.2, AT1G02840.3 | ||||
AtREG583 | CACGTGAC | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG  | ||||
REG | CACGTGAC | + | 626730 | 626737 | AT1G02840.1, AT1G02840.2, AT1G02840.3 | ||||
AtREG583 | CACGTGAC | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG  |