PlantPromoterDB promoter information of AT1G02800.1

Summary of Gene (AT1G02800.1)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G02800 TAIR NCBI
Gene model	AT1G02800.1
Description	Encodes a protein with similarity to endo-1,4-b-glucanases and is a member of Glycoside Hydrolase Family 9. CEL2 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia.

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Overview

Focused view (chromosome 1: 630653-629454)

`Genome position from initiation codon` TSS from cDNA TSS information AT1G02800.1 5'->3' (-) Promoter sequence AT1G02840.1 AT1G02840.2 AT1G02840.3 AT1G02850.1 AT1G02850.2 AT1G02850.3 AT1G02850.4 AT1G02850.5 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G02800.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone peak A clone - 616191 -88

TSS clone peak G clone - 616187 -84

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone peak	`A`	clone	-	616191	-88
TSS clone peak	`G`	clone	-	616187	-84

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 17 + 630512 AT1G02850.1, AT1G02850.3, AT1G02850.2, AT1G02850.4, AT1G02850.5

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	17	+	630512	AT1G02850.1, AT1G02850.3, AT1G02850.2, AT1G02850.4, AT1G02850.5

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone T clone + 630509 AT1G02850.1, AT1G02850.3, AT1G02850.2, AT1G02850.4, AT1G02850.5

TSS clone G clone + 630512 AT1G02850.1, AT1G02850.3, AT1G02850.2, AT1G02850.4, AT1G02850.5

TSS clone T clone + 630513 AT1G02850.1, AT1G02850.3, AT1G02850.2, AT1G02850.4, AT1G02850.5

TSS clone T clone + 630519 AT1G02850.1, AT1G02850.3, AT1G02850.2, AT1G02850.4, AT1G02850.5

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`T`	clone	+	630509	AT1G02850.1, AT1G02850.3, AT1G02850.2, AT1G02850.4, AT1G02850.5
TSS clone	`G`	clone	+	630512	AT1G02850.1, AT1G02850.3, AT1G02850.2, AT1G02850.4, AT1G02850.5
TSS clone	`T`	clone	+	630513	AT1G02850.1, AT1G02850.3, AT1G02850.2, AT1G02850.4, AT1G02850.5
TSS clone	`T`	clone	+	630519	AT1G02850.1, AT1G02850.3, AT1G02850.2, AT1G02850.4, AT1G02850.5

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG GTGGGTCC + 630276 630283 AT1G02850.1, AT1G02850.2, AT1G02850.3, AT1G02850.4, AT1G02850.5

AtREG523 GTGGGTCC PPDB Motif GGGACCC PLACE Motif

REG AAAAAGCC + 630317 630324 AT1G02850.1, AT1G02850.2, AT1G02850.3, AT1G02850.4, AT1G02850.5

AtREG589 AAAAAGCC PPDB Motif PLACE Motif

REG GGACCCAC + 630409 630416 AT1G02850.1, AT1G02850.2, AT1G02850.3, AT1G02850.4, AT1G02850.5

AtREG523 GGACCCAC PPDB Motif GGGACCC PLACE Motif