Summary of Gene (AT1G02800.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT1G02800.1 5'->3' (-) Promoter sequence AT1G02840.1
AT1G02840.2 AT1G02840.3 AT1G02850.1 AT1G02850.2 AT1G02850.3 AT1G02850.4 AT1G02850.5 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 616191 | -88 |
TSS clone peak | G | clone | - | 616187 | -84 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 17 | + | 630512 | AT1G02850.1, AT1G02850.3, AT1G02850.2, AT1G02850.4, AT1G02850.5 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | T | clone | + | 630509 | AT1G02850.1, AT1G02850.3, AT1G02850.2, AT1G02850.4, AT1G02850.5 |
TSS clone | G | clone | + | 630512 | AT1G02850.1, AT1G02850.3, AT1G02850.2, AT1G02850.4, AT1G02850.5 |
TSS clone | T | clone | + | 630513 | AT1G02850.1, AT1G02850.3, AT1G02850.2, AT1G02850.4, AT1G02850.5 |
TSS clone | T | clone | + | 630519 | AT1G02850.1, AT1G02850.3, AT1G02850.2, AT1G02850.4, AT1G02850.5 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | GTGGGTCC | + | 630276 | 630283 | AT1G02850.1, AT1G02850.2, AT1G02850.3, AT1G02850.4, AT1G02850.5 | ||||
AtREG523 | GTGGGTCC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
REG | AAAAAGCC | + | 630317 | 630324 | AT1G02850.1, AT1G02850.2, AT1G02850.3, AT1G02850.4, AT1G02850.5 | ||||
AtREG589 | AAAAAGCC | PPDB Motif |   | PLACE Motif |   | ||||
REG | GGACCCAC | + | 630409 | 630416 | AT1G02850.1, AT1G02850.2, AT1G02850.3, AT1G02850.4, AT1G02850.5 | ||||
AtREG523 | GGACCCAC | PPDB Motif | GGGACCC  | PLACE Motif |   |