PlantPromoterDB promoter information of AT1G02810

Summary of Gene (AT1G02810)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G02810 TAIR NCBI
Gene model	AT1G02810
Description	pectinesterase family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: ATPMEPCRB; pectinesterase (TAIR:AT4G02330.1); Has 1267 Blast hits to 1233 proteins in 181 species: Archae - 0; Bacteria - 238; Metazoa - 5; Fungi - 135; Plants - 888; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

#

Overview

Focused view (chromosome 1: 602134-603333)

`Genome position from initiation codon` `AT1G02750.1 TSS from cDNA TSS information AT1G02810 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G02810

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone + 618263 -21

TSS clone peak C clone + 618264 -20

TSS clone peak A clone + 618265 -19

TSS clone T clone + 618266 -18

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	+	618263	-21
TSS clone peak	`C`	clone	+	618264	-20
TSS clone peak	`A`	clone	+	618265	-19
TSS clone	`T`	clone	+	618266	-18

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box CTTATATAAACC + 618229 618240 -55 -44

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`CTTATATAAACC`	+	618229	618240	-55	-44
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG ACGCGTTTT + 618105 618113 -179 -171

AtREG633 ACGCGTTT PPDB Motif AAACG(C/G) PLACE Motif

AtREG566 CGCGTTTT PPDB Motif AAACG(C/G) PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`ACGCGTTTT`		+	618105	618113	-179	-171
	AtREG633	`ACGCGTTT`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
	AtREG566	`CGCGTTTT`		PPDB Motif	`AAACG(C/G)`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone peak G clone + 602554 AT1G02750.1

TSS clone peak A clone + 602564 AT1G02750.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone peak	`G`	clone	+	602554	AT1G02750.1
TSS clone peak	`A`	clone	+	602564	AT1G02750.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CAAGCCCATTTA + 602256 602267 AT1G02750.1

AtREG525 CAAGCCCA     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378 AAGCCCAT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG372   AGCCCATT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG386    GCCCATTT PPDB Motif GCCCA PLACE Motif

AtREG443     CCCATTTA PPDB Motif GCCCA PLACE Motif

REG CAAGCCCATTTA + 602290 602301 AT1G02750.1

AtREG525 CAAGCCCA     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378 AAGCCCAT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG372   AGCCCATT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG386    GCCCATTT PPDB Motif GCCCA PLACE Motif

AtREG443     CCCATTTA PPDB Motif GCCCA PLACE Motif

REG TTGACTTTAAGCCCATTTA + 602317 602335 AT1G02750.1

AtREG632 TTGACTTT            PPDB Motif PLACE Motif TTGAC

AtREG426        TAAGCCCA     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378         AAGCCCAT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG372          AGCCCATT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG386           GCCCATTT PPDB Motif GCCCA PLACE Motif

AtREG443            CCCATTTA PPDB Motif GCCCA PLACE Motif

REG GGCCTTTA + 602351 602358 AT1G02750.1

AtREG467 GGCCTTTA PPDB Motif PLACE Motif

REG ACCCCTGA + 602422 602429 AT1G02750.1

AtREG595 ACCCCTGA CK PPDB Motif ACCCCT PLACE Motif

REG TAAGGGTAT + 602459 602467 AT1G02750.1

AtREG570 TAAGGGTA PPDB Motif ACCCT PLACE Motif

AtREG623 AAGGGTAT PPDB Motif ACCCT PLACE Motif

REG CCATTAAG + 602505 602512 AT1G02750.1

AtREG604 CCATTAAG PPDB Motif PLACE Motif TTAATGG