Summary of Gene (AT1G02810)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT1G02810 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 618263 | -21 |
TSS clone peak | C | clone | + | 618264 | -20 |
TSS clone peak | A | clone | + | 618265 | -19 |
TSS clone | T | clone | + | 618266 | -18 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CTTATATAAACC | + | 618229 | 618240 | -55 | -44 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ACGCGTTTT | + | 618105 | 618113 | -179 | -171 | |||
AtREG633 | ACGCGTTT | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
AtREG566 | CGCGTTTT | PPDB Motif | AAACG(C/G)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | G | clone | + | 602554 | AT1G02750.1 |
TSS clone peak | A | clone | + | 602564 | AT1G02750.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | GCCCATTTA | + | 602327 | 602335 | AT1G02750.1 | ||||
AtREG386 | GCCCATTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG443 | CCCATTTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GGCCTTTA | + | 602351 | 602358 | AT1G02750.1 | ||||
AtREG467 | GGCCTTTA | PPDB Motif |   | PLACE Motif |   | ||||
REG | ACCCCTGA | + | 602422 | 602429 | AT1G02750.1 | ||||
AtREG595 | ACCCCTGA | CK | PPDB Motif | ACCCCT  | PLACE Motif |   | |||
REG | TAAGGGTAT | + | 602459 | 602467 | AT1G02750.1 | ||||
AtREG570 | TAAGGGTA | PPDB Motif | ACCCT  | PLACE Motif |   | ||||
AtREG623 | AAGGGTAT | PPDB Motif | ACCCT  | PLACE Motif |   | ||||
REG | CCATTAAG | + | 602505 | 602512 | AT1G02750.1 | ||||
AtREG604 | CCATTAAG | PPDB Motif |   | PLACE Motif | TTAATGG  |