PlantPromoterDB promoter information of AT1G02810

Summary of Gene (AT1G02810)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G02810 TAIR NCBI
Gene model	AT1G02810
Description	pectinesterase family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: ATPMEPCRB; pectinesterase (TAIR:AT4G02330.1); Has 1267 Blast hits to 1233 proteins in 181 species: Archae - 0; Bacteria - 238; Metazoa - 5; Fungi - 135; Plants - 888; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

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Overview

Focused view (chromosome 1: 608784-609983)

`Genome position from initiation codon` `TSS from cDNA TSS information AT1G02810 5'->3' (+) Promoter sequence AT1G02780.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G02810

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone + 618263 -21

TSS clone peak C clone + 618264 -20

TSS clone peak A clone + 618265 -19

TSS clone T clone + 618266 -18

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	+	618263	-21
TSS clone peak	`C`	clone	+	618264	-20
TSS clone peak	`A`	clone	+	618265	-19
TSS clone	`T`	clone	+	618266	-18

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box CTTATATAAACC + 618229 618240 -55 -44

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`CTTATATAAACC`	+	618229	618240	-55	-44
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG ACGCGTTTT + 618105 618113 -179 -171

AtREG633 ACGCGTTT PPDB Motif AAACG(C/G) PLACE Motif

AtREG566 CGCGTTTT PPDB Motif AAACG(C/G) PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`ACGCGTTTT`		+	618105	618113	-179	-171
	AtREG633	`ACGCGTTT`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
	AtREG566	`CGCGTTTT`		PPDB Motif	`AAACG(C/G)`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 251 - 609434 AT1G02780.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	251	-	609434	AT1G02780.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone - 609434 AT1G02780.1

TSS clone G clone - 609433 AT1G02780.1

TSS clone C clone - 609430 AT1G02780.1

TSS clone T clone - 609429 AT1G02780.1

TSS clone C clone - 609427 AT1G02780.1

TSS clone C clone - 609425 AT1G02780.1

TSS clone C clone - 609424 AT1G02780.1

TSS clone C clone - 609422 AT1G02780.1

TSS clone A clone - 609418 AT1G02780.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	-	609434	AT1G02780.1
TSS clone	`G`	clone	-	609433	AT1G02780.1
TSS clone	`C`	clone	-	609430	AT1G02780.1
TSS clone	`T`	clone	-	609429	AT1G02780.1
TSS clone	`C`	clone	-	609427	AT1G02780.1
TSS clone	`C`	clone	-	609425	AT1G02780.1
TSS clone	`C`	clone	-	609424	AT1G02780.1
TSS clone	`C`	clone	-	609422	AT1G02780.1
TSS clone	`A`	clone	-	609418	AT1G02780.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box GTATATAAATT - 609457 609467 AT1G02780.1

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`GTATATAAATT`	-	609457	609467	AT1G02780.1
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG ACCCTAGA - 609477 609484 AT1G02780.1

AtREG658 ACCCTAGA PPDB Motif ACCCT PLACE Motif

REG TTAAAGCCCAATAT - 609504 609517 AT1G02780.1

AtREG545 TTAAAGCC       PPDB Motif PLACE Motif

AtREG365 TAAAGCCC      PPDB Motif GCCCA PLACE Motif

AtREG376   AAAGCCCA     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407    AAGCCCAA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG402     AGCCCAAT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG355      GCCCAATA PPDB Motif GCCCA PLACE Motif

AtREG509       CCCAATAT PPDB Motif PLACE Motif

REG AAAAGCCCATTT - 609523 609534 AT1G02780.1

AtREG409 AAAAGCCC     PPDB Motif GCCCA PLACE Motif

AtREG376 AAAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378   AAGCCCAT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG372    AGCCCATT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG386     GCCCATTT PPDB Motif GCCCA PLACE Motif

REG TAATTGGG - 609540 609547 AT1G02780.1

AtREG600 TAATTGGG PPDB Motif GCCCA PLACE Motif