PlantPromoterDB promoter information of AT1G02840.3
Summary of Gene (AT1G02840.3)
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Overview
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Focused view (chromosome 1: 625918-627117)
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Genome position
from initiation codon AT1G02840.2 TSS from cDNA TSS information AT1G02840.3 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G02840.3
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | C | 2 | + | 626785 | -133 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | + | 626742 | -176 |
| TSS clone | C | clone | + | 626743 | -175 |
| TSS clone | C | clone | + | 626778 | -140 |
| TSS clone | T | clone | + | 626779 | -139 |
| TSS clone | A | clone | + | 626780 | -138 |
| TSS clone | A | clone | + | 626781 | -137 |
| TSS clone | A | clone | + | 626789 | -129 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CACGTGAC | + | 626721 | 626728 | -197 | -190 | |||
| AtREG583 | CACGTGAC | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG | ||||
| REG | CACGTGAC | + | 626730 | 626737 | -188 | -181 | |||
| AtREG583 | CACGTGAC | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||