PlantPromoterDB promoter information of AT1G03130
Summary of Gene (AT1G03130)
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Overview
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Focused view (chromosome 1: 755142-753943)
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Genome position
from initiation codon AT1G03140.1 TSS from cDNA TSS information AT1G03130 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G03130
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 769 | - | 754175 | -33 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 754175 | -33 |
| TSS clone | C | clone | - | 754174 | -32 |
| TSS clone | A | clone | - | 754173 | -31 |
| TSS clone | G | clone | - | 754172 | -30 |
| TSS clone | A | clone | - | 754161 | -19 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CTTATTGG | - | 754275 | 754282 | -133 | -140 | |||
| AtREG611 | CTTATTGG | PPDB Motif | PLACE Motif | ||||||
| REG | TAAGGGTA | - | 754306 | 754313 | -164 | -171 | |||
| AtREG570 | TAAGGGTA | PPDB Motif | ACCCT | PLACE Motif | |||||
| REG | GGCCTAAA | - | 754321 | 754328 | -179 | -186 | |||
| AtREG430 | GGCCTAAA | PPDB Motif | PLACE Motif | ||||||
| REG | AAAACGACA | - | 754330 | 754338 | -188 | -196 | |||
| AtREG520 | AAAACGAC | PPDB Motif | PLACE Motif | ||||||
| AtREG569 | AAACGACA | PPDB Motif | PLACE Motif | ||||||
| REG | TCAAAACG | - | 754422 | 754429 | -280 | -287 | |||
| AtREG653 | TCAAAACG | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||