PlantPromoterDB promoter information of AT1G04010.1

Summary of Gene (AT1G04010.1)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G04010 TAIR NCBI
Gene model	AT1G04010.1
Description	phosphatidate-sterol O-acyltransferase/ phosphatidylcholine-sterol O-acyltransferase/ phosphatidylethanolamine-sterol O-acyltransferase; FUNCTIONS IN: phosphatidylcholine-sterol O-acyltransferase activity, phosphatidylethanolamine-sterol O-acyltransferase activity, phosphatidate-sterol O-acyltransferase activity; INVOLVED IN: sterol esterification, lipid metabolic process; LOCATED IN: microsome; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Lecithin:cholesterol acyltransferase (InterPro:IPR003386); BEST Arabidopsis thaliana protein match is: ATPDAT; phosphatidylcholine-sterol O-acyltransferase (TAIR:AT5G13640.1); Has 448 Blast hits to 445 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 219; Fungi - 76; Plants - 80; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).

#

Overview

Focused view (chromosome 1: 1037128-1035929)

`Genome position from initiation codon` `TSS from cDNA TSS information AT1G04010.1 5'->3' (-) Promoter sequence AT1G04020.1 AT1G04020.2 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G04010.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 2 - 1036209 -81

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	2	-	1036209	-81

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone T clone - 1036237 -109

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`T`	clone	-	1036237	-109

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TTTCCTCCT - 1036167 1036175 -39 -47

Y Patch CTCTCTCTCTCTCCTCTCTCTT - 1036179 1036200 -51 -72

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TTTCCTCCT`	-	1036167	1036175	-39	-47
Y Patch	`CTCTCTCTCTCTCCTCTCTCTT`	-	1036179	1036200	-51	-72
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TAAGGGTAT - 1036270 1036278 -142 -150

AtREG570 TAAGGGTA PPDB Motif ACCCT PLACE Motif

AtREG623 AAGGGTAT PPDB Motif ACCCT PLACE Motif

REG CAAAGGCCCAATTAAAAGCCCATTT - 1036335 1036359 -207 -231

AtREG656 CAAAGGCC                  PPDB Motif PLACE Motif

AtREG359 AAAGGCCC                 PPDB Motif GCCCA PLACE Motif GGGCC

AtREG353   AAGGCCCA                PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356    AGGCCCAA               PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG352     GGCCCAAT              PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG418      GCCCAATT             PPDB Motif GCCCA PLACE Motif

AtREG600       CCCAATTA            PPDB Motif GCCCA PLACE Motif

AtREG549             TAAAAGCC      PPDB Motif PLACE Motif

AtREG409              AAAAGCCC     PPDB Motif GCCCA PLACE Motif

AtREG376               AAAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378                AAGCCCAT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG372                 AGCCCATT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG386                  GCCCATTT PPDB Motif GCCCA PLACE Motif

REG AGACACGTGTAC - 1036481 1036492 -353 -364

AtREG470 AGACACGT     ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

AtREG366 GACACGTG    ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC

AtREG453    CACGTGTA ABA, DREB1Aox PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACACNNG

AtREG562     ACGTGTAC ABA, Auxin PPDB Motif ACGT PLACE Motif ACGT, ACGTG

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TAAGGGTAT`		-	1036270	1036278	-142	-150
	AtREG570	`TAAGGGTA`		PPDB Motif	`ACCCT`	PLACE Motif
	AtREG623	`AAGGGTAT`		PPDB Motif	`ACCCT`	PLACE Motif
REG	`CAAAGGCCCAATTAAAAGCCCATTT`		-	1036335	1036359	-207	-231
	AtREG656	`CAAAGGCC`		PPDB Motif		PLACE Motif
	AtREG359	`AAAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG353	`AAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG356	`AGGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG352	`GGCCCAAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG418	`GCCCAATT`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG600	`CCCAATTA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG549	`TAAAAGCC`		PPDB Motif		PLACE Motif
	AtREG409	`AAAAGCCC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG376	`AAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG378	`AAGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG372	`AGCCCATT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG386	`GCCCATTT`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`AGACACGTGTAC`		-	1036481	1036492	-353	-364
	AtREG470	`AGACACGT`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, ACGTGKC, ACGTGTC`
	AtREG366	`GACACGTG`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC`
	AtREG453	`CACGTGTA`	ABA, DREB1Aox	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, ACACNNG`
	AtREG562	`ACGTGTAC`	ABA, Auxin	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 4 + 1036539 AT1G04020.2, AT1G04020.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	4	+	1036539	AT1G04020.2, AT1G04020.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTTCTCCTTCTCTTCTC + 1036545 1036562 AT1G04020.1, AT1G04020.2

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTTCTCCTTCTCTTCTC`	+	1036545	1036562	AT1G04020.1, AT1G04020.2
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG ATACCCTTA + 1036270 1036278 AT1G04020.1, AT1G04020.2

AtREG623 ATACCCTT PPDB Motif ACCCT PLACE Motif

AtREG570 TACCCTTA PPDB Motif ACCCT PLACE Motif

REG AAATGGGCTTTTAATTGGGCCTTTG + 1036335 1036359 AT1G04020.1, AT1G04020.2

AtREG386 AAATGGGC                  PPDB Motif GCCCA PLACE Motif

AtREG372 AATGGGCT                 PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378   ATGGGCTT                PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG376    TGGGCTTT               PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG409     GGGCTTTT              PPDB Motif GCCCA PLACE Motif

AtREG549      GGCTTTTA             PPDB Motif PLACE Motif

AtREG600            TAATTGGG       PPDB Motif GCCCA PLACE Motif

AtREG418             AATTGGGC      PPDB Motif GCCCA PLACE Motif

AtREG352              ATTGGGCC     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356               TTGGGCCT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG353                TGGGCCTT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG359                 GGGCCTTT PPDB Motif GCCCA PLACE Motif GGGCC

AtREG656                  GGCCTTTG PPDB Motif PLACE Motif

REG GTACACGTGTCT + 1036481 1036492 AT1G04020.1, AT1G04020.2

AtREG562 GTACACGT     ABA, Auxin PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG453 TACACGTG    ABA, DREB1Aox PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACACNNG

AtREG366    CACGTGTC ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC

AtREG470     ACGTGTCT ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC