PlantPromoterDB promoter information of AT1G04170.1
Summary of Gene (AT1G04170.1)
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Overview
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Focused view (chromosome 1: 1096423-1097622)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G04170.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G04170.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | + | 1096946 | -477 |
| TSS clone | G | clone | + | 1096960 | -463 |
| TSS clone | A | clone | + | 1096984 | -439 |
| TSS clone peak | A | clone | + | 1097022 | -401 |
| TSS clone | T | clone | + | 1097031 | -392 |
| TSS clone | T | clone | + | 1097036 | -387 |
| TSS clone | C | clone | + | 1097067 | -356 |
| TSS clone | A | clone | + | 1097084 | -339 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTTCTTC | + | 1097040 | 1097047 | -383 | -376 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TGTTGGGCCAA | + | 1096774 | 1096784 | -649 | -639 | |||
| AtREG543 | TGTTGGGC | PPDB Motif | GCCCA | PLACE Motif | CAACA | ||||
| AtREG449 | GTTGGGCC | PPDB Motif | GCCCA, CCAACGG | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG420 | TTGGGCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG484 | TGGGCCAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||