PlantPromoterDB promoter information of AT1G04350
Summary of Gene (AT1G04350)
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Overview
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Focused view (chromosome 1: 1164296-1165495)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G04350 5'->3' (+) Promoter sequence AT1G04340.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G04350
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 8 | + | 1165239 | -57 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | + | 1165213 | -83 |
| TSS clone | T | clone | + | 1165240 | -56 |
| TSS clone | T | clone | + | 1165242 | -54 |
| TSS clone | T | clone | + | 1165244 | -52 |
| TSS clone | A | clone | + | 1165245 | -51 |
| TSS clone | A | clone | + | 1165268 | -28 |
| TSS clone | A | clone | + | 1165279 | -17 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CCTTCTTCTTCTTCTT | + | 1165218 | 1165233 | -78 | -63 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TTAAACCGAA | + | 1164951 | 1164960 | -345 | -336 | |||
| AtREG473 | TTAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG514 | TAAACCGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG568 | AAACCGAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | AAAACCGGAC | + | 1165041 | 1165050 | -255 | -246 | |||
| AtREG542 | AAAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG521 | AAACCGGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG573 | AACCGGAC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | TGTCGTTTC | + | 1165152 | 1165160 | -144 | -136 | |||
| AtREG569 | TGTCGTTT | PPDB Motif | PLACE Motif | ||||||
| AtREG576 | GTCGTTTC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone peak | A | clone | - | 1164851 | AT1G04340.1 |
| TSS clone peak | A | clone | - | 1164816 | AT1G04340.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | ATTATATAAATT | - | 1164876 | 1164887 | AT1G04340.1 | |
| Y Patch | CGTCTCTC | - | 1164793 | 1164800 | AT1G04340.1 | |
| Y Patch | TTTCTCTCT | - | 1164860 | 1164868 | AT1G04340.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | CGGTTCAATTCGGTTTAG | - | 1164915 | 1164932 | AT1G04340.1 | ||||
| AtREG640 | CGGTTCAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG568 | TTCGGTTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG514 | TCGGTTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG511 | CGGTTTAG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | TTCGGTTTAA | - | 1164951 | 1164960 | AT1G04340.1 | ||||
| AtREG568 | TTCGGTTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG514 | TCGGTTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG473 | CGGTTTAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | GTCCGGTTTT | - | 1165041 | 1165050 | AT1G04340.1 | ||||
| AtREG573 | GTCCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG521 | TCCGGTTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG542 | CCGGTTTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||