PlantPromoterDB promoter information of AT1G04870.2
Summary of Gene (AT1G04870.2)
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Overview
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Focused view (chromosome 1: 1376598-1375399)
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Genome position
from initiation codon AT1G04880.1 TSS from cDNA TSS information AT1G04870.2 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G04870.2
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 4 | - | 1375716 | -118 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | - | 1375742 | -144 |
| TSS clone | A | clone | - | 1375740 | -142 |
| TSS clone | A | clone | - | 1375734 | -136 |
| TSS clone | G | clone | - | 1375720 | -122 |
| TSS clone | C | clone | - | 1375717 | -119 |
| TSS clone | T | clone | - | 1375715 | -117 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TTTATAAAAG | - | 1375743 | 1375752 | -145 | -154 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAATGGGCCGAA | - | 1375818 | 1375829 | -220 | -231 | |||
| AtREG386 | AAATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG361 | AATGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG380 | ATGGGCCG | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG393 | TGGGCCGA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG427 | GGGCCGAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| REG | TTGGGCTTG | - | 1375836 | 1375844 | -238 | -246 | |||
| AtREG407 | TTGGGCTT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG525 | TGGGCTTG | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| REG | GGGCCTTAT | - | 1375849 | 1375857 | -251 | -259 | |||
| AtREG351 | GGGCCTTA | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG425 | GGCCTTAT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | TTAATGGG | - | 1375890 | 1375897 | -292 | -299 | |||
| AtREG396 | TTAATGGG | PPDB Motif | GCCCA | PLACE Motif | TTAATGG | ||||
| REG | TGGCCCAAG | - | 1376005 | 1376013 | -407 | -415 | |||
| AtREG420 | TGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG505 | GGCCCAAG | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||