PlantPromoterDB promoter information of AT1G05010
Summary of Gene (AT1G05010)
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Overview
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Focused view (chromosome 1: 1425895-1424696)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G05010 5'->3' (-) Promoter sequence AT1G05000.1
AT1G05000.2 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G05010
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 4 | - | 1432862 | -167 |
| TSS peak | A | 4 | - | 1432793 | -98 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 1432858 | -163 |
| TSS clone | T | clone | - | 1432803 | -108 |
| TSS clone | A | clone | - | 1432764 | -69 |
| TSS clone | T | clone | - | 1432763 | -68 |
| TSS clone | T | clone | - | 1432761 | -66 |
| TSS clone | A | clone | - | 1432759 | -64 |
| TSS clone | A | clone | - | 1432758 | -63 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTTCTCTCT | - | 1432794 | 1432802 | -99 | -107 |
| Y Patch | TCCTCTCT | - | 1432811 | 1432818 | -116 | -123 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CGGTTAAA | - | 1433096 | 1433103 | -401 | -408 | |||
| AtREG645 | CGGTTAAA | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone peak | G | clone | + | 1425593 | AT1G05000.1, AT1G05000.2 |
| TSS clone peak | C | clone | + | 1425595 | AT1G05000.1, AT1G05000.2 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TCCATATAAACC | + | 1425557 | 1425568 | AT1G05000.1, AT1G05000.2 | |
| Y Patch | TCTCTCTCC | + | 1425551 | 1425559 | AT1G05000.1, AT1G05000.2 | |
| Y Patch | CTCTCCTC | + | 1425612 | 1425619 | AT1G05000.1, AT1G05000.2 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||