Summary of Gene (AT1G05010)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT1G05010 5'->3' (-) Promoter sequence AT1G05000.1
AT1G05000.2 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 4 | - | 1432862 | -167 |
TSS peak | A | 4 | - | 1432793 | -98 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 1432858 | -163 |
TSS clone | T | clone | - | 1432803 | -108 |
TSS clone | A | clone | - | 1432764 | -69 |
TSS clone | T | clone | - | 1432763 | -68 |
TSS clone | T | clone | - | 1432761 | -66 |
TSS clone | A | clone | - | 1432759 | -64 |
TSS clone | A | clone | - | 1432758 | -63 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTTCTCTCT | - | 1432794 | 1432802 | -99 | -107 |
Y Patch | TCCTCTCT | - | 1432811 | 1432818 | -116 | -123 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CGGTTAAA | - | 1433096 | 1433103 | -401 | -408 | |||
AtREG645 | CGGTTAAA | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | G | clone | + | 1425593 | AT1G05000.1, AT1G05000.2 |
TSS clone peak | C | clone | + | 1425595 | AT1G05000.1, AT1G05000.2 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TCCATATAAACC | + | 1425557 | 1425568 | AT1G05000.1, AT1G05000.2 | |
Y Patch | TCTCTCTCC | + | 1425551 | 1425559 | AT1G05000.1, AT1G05000.2 | |
Y Patch | CTCTCCTC | + | 1425612 | 1425619 | AT1G05000.1, AT1G05000.2 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |