PlantPromoterDB promoter information of AT1G05510
Summary of Gene (AT1G05510)
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Overview
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Focused view (chromosome 1: 1628527-1629726)
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Genome position
from initiation codon AT1G05510.1 TSS from cDNA TSS information AT1G05510 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G05510
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 13 | + | 1629458 | -69 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 1629449 | -78 |
| TSS clone | T | clone | + | 1629451 | -76 |
| TSS clone | T | clone | + | 1629453 | -74 |
| TSS clone | T | clone | + | 1629459 | -68 |
| TSS clone | C | clone | + | 1629470 | -57 |
| TSS clone | A | clone | + | 1629476 | -51 |
| TSS clone | A | clone | + | 1629518 | -9 |
| TSS clone | T | clone | + | 1629523 | -4 |
| TSS clone | T | clone | + | 1629525 | -2 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCTTCTT | + | 1629449 | 1629457 | -78 | -70 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TAAGGGGT | + | 1629166 | 1629173 | -361 | -354 | |||
| AtREG636 | TAAGGGGT | PPDB Motif | ACCCCT | PLACE Motif | |||||
| REG | AAGCCACG | + | 1629349 | 1629356 | -178 | -171 | |||
| AtREG608 | AAGCCACG | ABA | PPDB Motif | PLACE Motif | GCCAC | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||