PlantPromoterDB promoter information of AT1G05570.1
Summary of Gene (AT1G05570.1)
|
Overview
|
Focused view (chromosome 1: 1659677-1658478)
|
Genome position
from initiation codon TSS from cDNA TSS information AT1G05570.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT1G05570.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 13 | - | 1659441 | -764 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TACTATAAACT | - | 1659464 | 1659474 | -787 | -797 |
| Y Patch | TTTCTCTCTCCTCTCTTC | - | 1659407 | 1659424 | -730 | -747 |
| Y Patch | TTCCTCTCC | - | 1659430 | 1659438 | -753 | -761 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GATGACGTGGCAG | - | 1659520 | 1659532 | -843 | -855 | |||
| AtREG578 | GATGACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT | |||
| AtREG483 | ATGACGTG | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
| AtREG419 | TGACGTGG | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA | ||||
| AtREG388 | GACGTGGC | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | ||||
| AtREG379 | ACGTGGCA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG468 | CGTGGCAG | ABA | PPDB Motif | PLACE Motif | GCCAC | ||||
| REG | AAAACGAC | - | 1659587 | 1659594 | -910 | -917 | |||
| AtREG520 | AAAACGAC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||