Summary of Gene (AT1G05575)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT1G05575 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 1662177 | -79 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CTCTATATAAACC | - | 1662209 | 1662221 | -111 | -123 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ATAAGGCC | - | 1662238 | 1662245 | -140 | -147 | |||
AtREG425 | ATAAGGCC | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 13 | - | 1659441 | AT1G05570.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TACTATAAACT | - | 1659464 | 1659474 | AT1G05570.1 | |
Y Patch | TTTCTCTCTCCTCTCTTC | - | 1659407 | 1659424 | AT1G05570.1 | |
Y Patch | TTCCTCTCC | - | 1659430 | 1659438 | AT1G05570.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | GATGACGTGGCAG | - | 1659520 | 1659532 | AT1G05570.1 | ||||
AtREG578 | GATGACGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT  | |||
AtREG483 | ATGACGTG | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | ||||
AtREG419 | TGACGTGG | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA  | ||||
AtREG388 | GACGTGGC | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | ||||
AtREG379 | ACGTGGCA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | |||
AtREG468 | CGTGGCAG | ABA | PPDB Motif |   | PLACE Motif | GCCAC  |