Summary of Gene (AT1G05850)
|
Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT1G05850 5'->3' (-) Promoter sequence AT1G05860.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 300 | - | 1768663 | -546 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | - | 1768695 | -578 |
TSS clone | G | clone | - | 1768690 | -573 |
TSS clone | C | clone | - | 1768665 | -548 |
TSS clone | A | clone | - | 1768663 | -546 |
TSS clone | A | clone | - | 1768662 | -545 |
TSS clone | A | clone | - | 1768659 | -542 |
TSS clone | T | clone | - | 1768656 | -539 |
TSS clone | T | clone | - | 1768654 | -537 |
TSS clone | C | clone | - | 1768652 | -535 |
TSS clone | A | clone | - | 1768648 | -531 |
TSS clone | T | clone | - | 1768647 | -530 |
TSS clone | G | clone | - | 1768639 | -522 |
TSS clone | A | clone | - | 1768637 | -520 |
TSS clone | T | clone | - | 1768612 | -495 |
TSS clone | T | clone | - | 1768574 | -457 |
TSS clone | T | clone | - | 1768562 | -445 |
TSS clone | T | clone | - | 1768137 | -20 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTCTTCCT | - | 1768650 | 1768658 | -533 | -541 |
Y Patch | TTTCTTCTTCCTCCTCTCTTTC | - | 1768666 | 1768687 | -549 | -570 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ATCCAACGG | - | 1768729 | 1768737 | -612 | -620 | |||
AtREG586 | ATCCAACG | PPDB Motif | CCAACGG  | PLACE Motif |   | ||||
AtREG554 | TCCAACGG | PPDB Motif | CCAACGG  | PLACE Motif | YAACKG, CNGTTR  | ||||
REG | TAGGGCCCACA | - | 1768813 | 1768823 | -696 | -706 | |||
AtREG387 | TAGGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG400 | AGGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG612 | GGCCCACA | DREB1Aox | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | |||
REG | TAAAAGCCCAATGGGCCATA | - | 1768926 | 1768945 | -809 | -828 | |||
AtREG549 | TAAAAGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG409 | AAAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG376 | AAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | AAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG402 | AGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG461 | GCCCAATG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG551 | CAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG361 | AATGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG490 | ATGGGCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG437 | TGGGCCAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG479 | GGGCCATA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
REG | GGCCTTAC | - | 1768947 | 1768954 | -830 | -837 | |||
AtREG530 | GGCCTTAC | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTCTCTTTCTCTCTCCC | + | 1769025 | 1769041 | AT1G05860.1 | |
Y Patch | CCTTCTTCTTCC | + | 1769085 | 1769096 | AT1G05860.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TGTGGGCCCTA | + | 1768813 | 1768823 | AT1G05860.1 | ||||
AtREG612 | TGTGGGCC | DREB1Aox | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | |||
AtREG400 | TGGGCCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG387 | GGGCCCTA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
REG | TATGGCCCATTGGGCTTTTA | + | 1768926 | 1768945 | AT1G05860.1 | ||||
AtREG479 | TATGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG437 | ATGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG490 | TGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG361 | GGCCCATT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG551 | GCCCATTG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG461 | CATTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG402 | ATTGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | TTGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG376 | TGGGCTTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG409 | GGGCTTTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG549 | GGCTTTTA | PPDB Motif |   | PLACE Motif |   | ||||
REG | GTAAGGCC | + | 1768947 | 1768954 | AT1G05860.1 | ||||
AtREG530 | GTAAGGCC | PPDB Motif |   | PLACE Motif |   |