PlantPromoterDB promoter information of AT1G06000
Summary of Gene (AT1G06000)
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Overview
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Focused view (chromosome 1: 1822802-1821603)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G06000 5'->3' (-) Promoter sequence AT1G06010.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G06000
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 4 | - | 1821868 | -66 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 1821892 | -90 |
| TSS clone | T | clone | - | 1821888 | -86 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TTTATAAATA | - | 1821901 | 1821910 | -99 | -108 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGCTTTAT | - | 1821978 | 1821985 | -176 | -183 | |||
| AtREG601 | GGCTTTAT | PPDB Motif | PLACE Motif | ||||||
| REG | CCACGTAG | - | 1822007 | 1822014 | -205 | -212 | |||
| AtREG495 | CCACGTAG | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
| REG | GAATGGGCCGG | - | 1822056 | 1822066 | -254 | -264 | |||
| AtREG643 | GAATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG361 | AATGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG380 | ATGGGCCG | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG457 | TGGGCCGG | CK | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | C | clone | + | 1822600 | AT1G06010.1 |
| TSS clone peak | T | clone | + | 1822601 | AT1G06010.1 |
| TSS clone peak | A | clone | + | 1822618 | AT1G06010.1 |
| TSS clone | T | clone | + | 1822619 | AT1G06010.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTCTTCTTCC | + | 1822586 | 1822595 | AT1G06010.1 | |
| Y Patch | TCTCTCTCTTTC | + | 1822599 | 1822610 | AT1G06010.1 | |
| Y Patch | CTCTCCTCT | + | 1822651 | 1822659 | AT1G06010.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | GATGACGT | + | 1822433 | 1822440 | AT1G06010.1 | ||||
| AtREG578 | GATGACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT | |||
| REG | TACCCTTA | + | 1822489 | 1822496 | AT1G06010.1 | ||||
| AtREG570 | TACCCTTA | PPDB Motif | ACCCT | PLACE Motif | |||||
| REG | ACCGGTTTAA | + | 1822544 | 1822553 | AT1G06010.1 | ||||
| AtREG436 | ACCGGTTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG412 | CCGGTTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG473 | CGGTTTAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | AACCCGGTT | + | 1822556 | 1822564 | AT1G06010.1 | ||||
| AtREG516 | AACCCGGT | PPDB Motif | PLACE Motif | ||||||
| AtREG455 | ACCCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||