PlantPromoterDB promoter information of AT1G06040
Summary of Gene (AT1G06040)
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Overview
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Focused view (chromosome 1: 1830659-1829460)
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Genome position
from initiation codon AT1G06040.2 AT1G06050.1 TSS from cDNA TSS information AT1G06040 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G06040
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 26 | - | 1829807 | -148 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 1829880 | -221 |
| TSS clone | A | clone | - | 1829849 | -190 |
| TSS clone | T | clone | - | 1829848 | -189 |
| TSS clone | T | clone | - | 1829806 | -147 |
| TSS clone | A | clone | - | 1829789 | -130 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTCTTTCTCT | - | 1829778 | 1829787 | -119 | -128 |
| Y Patch | TCTTCTCT | - | 1829791 | 1829798 | -132 | -139 |
| Y Patch | CTCTCTCCCTCT | - | 1829810 | 1829821 | -151 | -162 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GTGGGACCC | - | 1829970 | 1829978 | -311 | -319 | |||
| AtREG406 | GTGGGACC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| AtREG596 | TGGGACCC | PPDB Motif | GGGACCC | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||