PlantPromoterDB promoter information of AT1G06460
Summary of Gene (AT1G06460)
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Overview
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Focused view (chromosome 1: 1970414-1969215)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G06460 5'->3' (-) Promoter sequence AT1G06470.1
AT1G06470.2 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G06460
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 13 | - | 1969486 | -72 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | - | 1969528 | -114 |
| TSS clone | A | clone | - | 1969486 | -72 |
| TSS clone | G | clone | - | 1969476 | -62 |
| TSS clone | T | clone | - | 1969475 | -61 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTCCTCCT | - | 1969477 | 1969484 | -63 | -70 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CGCGTTTTGA | - | 1969647 | 1969656 | -233 | -242 | |||
| AtREG566 | CGCGTTTT | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| AtREG585 | GCGTTTTG | PPDB Motif | AAACG(C/G) | PLACE Motif | CAAAACGC | ||||
| AtREG653 | CGTTTTGA | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone peak | G | clone | + | 1969729 | AT1G06470.1, AT1G06470.2 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | GGCTTTAA | + | 1969509 | 1969516 | AT1G06470.1, AT1G06470.2 | ||||
| AtREG545 | GGCTTTAA | PPDB Motif | PLACE Motif | ||||||
| REG | TCAAAACGCG | + | 1969647 | 1969656 | AT1G06470.1, AT1G06470.2 | ||||
| AtREG653 | TCAAAACG | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| AtREG585 | CAAAACGC | PPDB Motif | AAACG(C/G) | PLACE Motif | CAAAACGC | ||||
| AtREG566 | AAAACGCG | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||