PlantPromoterDB promoter information of AT1G06680
Summary of Gene (AT1G06680)
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Overview
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Focused view (chromosome 1: 2046940-2048139)
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Genome position
from initiation codon AT1G06680.1 AT1G06680.2 TSS from cDNA TSS information AT1G06680 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G06680
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 215 | + | 2047890 | -50 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | + | 2047834 | -106 |
| TSS clone | A | clone | + | 2047861 | -79 |
| TSS clone | A | clone | + | 2047864 | -76 |
| TSS clone | A | clone | + | 2047877 | -63 |
| TSS clone | C | clone | + | 2047878 | -62 |
| TSS clone | T | clone | + | 2047879 | -61 |
| TSS clone | A | clone | + | 2047883 | -57 |
| TSS clone | T | clone | + | 2047884 | -56 |
| TSS clone | A | clone | + | 2047885 | -55 |
| TSS clone | A | clone | + | 2047886 | -54 |
| TSS clone | A | clone | + | 2047890 | -50 |
| TSS clone | A | clone | + | 2047891 | -49 |
| TSS clone | C | clone | + | 2047899 | -41 |
| TSS clone | A | clone | + | 2047900 | -40 |
| TSS clone | A | clone | + | 2047901 | -39 |
| TSS clone | A | clone | + | 2047913 | -27 |
| TSS clone | A | clone | + | 2047915 | -25 |
| TSS clone | A | clone | + | 2047916 | -24 |
| TSS clone | A | clone | + | 2047921 | -19 |
| TSS clone | A | clone | + | 2047927 | -13 |
| TSS clone | A | clone | + | 2048025 | 85 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CTGACGTGGAA | + | 2047710 | 2047720 | -230 | -220 | |||
| AtREG440 | CTGACGTG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| AtREG419 | TGACGTGG | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA | ||||
| AtREG627 | ACGTGGAA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
| REG | CTGCCACGTGGCAC | + | 2047737 | 2047750 | -203 | -190 | |||
| AtREG468 | CTGCCACG | ABA | PPDB Motif | PLACE Motif | GCCAC | ||||
| AtREG367 | GCCACGTGGC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC | |||
| AtREG379 | TGCCACGTGGCA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG444 | CGTGGCAC | PPDB Motif | PLACE Motif | GCCAC | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||