Summary of Gene (AT1G07250.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT1G07250.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 5 | + | 2225090 | -873 |
TSS peak | A | 17 | + | 2225863 | -100 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | + | 2225808 | -155 |
TSS clone | A | clone | + | 2225880 | -83 |
TSS clone | C | clone | + | 2225913 | -50 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TCACGCGCT | + | 2224797 | 2224805 | -1166 | -1158 | |||
AtREG395 | TCACGCGC | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
AtREG381 | CACGCGCT | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
REG | CAATGGGCCGT | + | 2224904 | 2224914 | -1059 | -1049 | |||
AtREG551 | CAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG361 | AATGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG380 | ATGGGCCG | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG368 | TGGGCCGT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
REG | AGTTGGGCTC | + | 2224927 | 2224936 | -1036 | -1027 | |||
AtREG607 | AGTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG574 | GTTGGGCT | PPDB Motif | GCCCA, CCAACGG  | PLACE Motif | TGGGCY  | ||||
AtREG533 | TTGGGCTC | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
REG | TTGGCCCACA | + | 2224951 | 2224960 | -1012 | -1003 | |||
AtREG484 | TTGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG612 | GGCCCACA | DREB1Aox | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |