PlantPromoterDB promoter information of AT1G07370
Summary of Gene (AT1G07370)
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Overview
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Focused view (chromosome 1: 2262204-2263403)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G07370 5'->3' (+) Promoter sequence AT1G07360.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G07370
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 2263137 | -67 |
| TSS clone peak | A | clone | + | 2263154 | -50 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CTTATAAATC | + | 2263104 | 2263113 | -100 | -91 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AGTCGGTT | + | 2262872 | 2262879 | -332 | -325 | |||
| AtREG641 | AGTCGGTT | PPDB Motif | AACCG(G/A), CCGAC | PLACE Motif | CCGAC, RCCGAC | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 8 | - | 2262803 | AT1G07360.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | T | clone | - | 2262865 | AT1G07360.1 |
| TSS clone | T | clone | - | 2262851 | AT1G07360.1 |
| TSS clone | T | clone | - | 2262843 | AT1G07360.1 |
| TSS clone | G | clone | - | 2262832 | AT1G07360.1 |
| TSS clone | G | clone | - | 2262827 | AT1G07360.1 |
| TSS clone | A | clone | - | 2262826 | AT1G07360.1 |
| TSS clone | T | clone | - | 2262823 | AT1G07360.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCCTTC | - | 2262841 | 2262848 | AT1G07360.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | AACCGACT | - | 2262872 | 2262879 | AT1G07360.1 | ||||
| AtREG641 | AACCGACT | PPDB Motif | AACCG(G/A), CCGAC | PLACE Motif | CCGAC, RCCGAC | ||||