PlantPromoterDB promoter information of AT1G07640.1
Summary of Gene (AT1G07640.1)
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Overview
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Focused view (chromosome 1: 2356534-2355335)
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Genome position
from initiation codon AT1G07640.3 TSS from cDNA TSS information AT1G07640.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G07640.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 15 | - | 2355773 | -239 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 2356227 | -693 |
| TSS clone | A | clone | - | 2355771 | -237 |
| TSS clone | T | clone | - | 2355770 | -236 |
| TSS clone | A | clone | - | 2355752 | -218 |
| TSS clone | T | clone | - | 2355747 | -213 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CATCTATATATATG | - | 2355796 | 2355809 | -262 | -275 |
| Y Patch | TTCTTCCT | - | 2355784 | 2355791 | -250 | -257 |
| Y Patch | CTCTCTTC | - | 2356175 | 2356182 | -641 | -648 |
| Y Patch | CATCTCTCTTCTC | - | 2356204 | 2356216 | -670 | -682 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATAAACCGT | - | 2356353 | 2356361 | -819 | -827 | |||
| AtREG598 | ATAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG652 | TAAACCGT | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||