PlantPromoterDB promoter information of AT1G07820.1

Summary of Gene (AT1G07820.1)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G07820 TAIR NCBI
Gene model	AT1G07820.1
Description	histone H4; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125), Histone H4 (InterPro:IPR001951); BEST Arabidopsis thaliana protein match is: histone H4 (TAIR:AT5G59970.1); Has 2713 Blast hits to 2713 proteins in 359 species: Archae - 0; Bacteria - 0; Metazoa - 1566; Fungi - 279; Plants - 355; Viruses - 6; Other Eukaryotes - 507 (source: NCBI BLink).

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Overview

Focused view (chromosome 1: 2422746-2421547)

`Genome position from initiation codon` `AT1G07820.2 TSS from cDNA TSS information AT1G07820.1 5'->3' (-) Promoter sequence AT1G07830.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G07820.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone T clone - 2421944 -198

TSS clone peak C clone - 2421943 -197

TSS clone peak G clone - 2421941 -195

TSS clone T clone - 2421940 -194

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`T`	clone	-	2421944	-198
TSS clone peak	`C`	clone	-	2421943	-197
TSS clone peak	`G`	clone	-	2421941	-195
TSS clone	`T`	clone	-	2421940	-194

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box TTTATATATT - 2421969 2421978 -223 -232

Y Patch TCTTCTTCTTCT - 2421888 2421899 -142 -153

Y Patch TCCTCTCTCC - 2421917 2421926 -171 -180

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`TTTATATATT`	-	2421969	2421978	-223	-232
Y Patch	`TCTTCTTCTTCT`	-	2421888	2421899	-142	-153
Y Patch	`TCCTCTCTCC`	-	2421917	2421926	-171	-180
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG ATCCACGTCATC - 2422063 2422074 -317 -328

AtREG547 ATCCACGT     ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG419   CCACGTCA   PPDB Motif ACGT PLACE Motif ACGT, ACGTG, TGACGTGG, CCACGTCA

AtREG483    CACGTCAT PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG578     ACGTCATC ABA PPDB Motif ACGT PLACE Motif ACGT

REG TTAAGGCCTAAT - 2422165 2422176 -419 -430

AtREG416 TTAAGGCC     PPDB Motif PLACE Motif

AtREG506     GGCCTAAT PPDB Motif PLACE Motif

REG TTATTGGGCCA - 2422193 2422203 -447 -457

AtREG417 TTATTGGG    PPDB Motif GCCCA PLACE Motif

AtREG355 TATTGGGC   PPDB Motif GCCCA PLACE Motif

AtREG352   ATTGGGCC PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG420    TTGGGCCA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

REG GGGCCCAATA - 2422228 2422237 -482 -491

AtREG392 GGGCCCAA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG352 GGCCCAAT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG355   GCCCAATA PPDB Motif GCCCA PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`ATCCACGTCATC`		-	2422063	2422074	-317	-328
	AtREG547	`ATCCACGT`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`
	AtREG419	`CCACGTCA`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, TGACGTGG, CCACGTCA`
	AtREG483	`CACGTCAT`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`
	AtREG578	`ACGTCATC`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT`
REG	`TTAAGGCCTAAT`		-	2422165	2422176	-419	-430
	AtREG416	`TTAAGGCC`		PPDB Motif		PLACE Motif
	AtREG506	`GGCCTAAT`		PPDB Motif		PLACE Motif
REG	`TTATTGGGCCA`		-	2422193	2422203	-447	-457
	AtREG417	`TTATTGGG`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG355	`TATTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG352	`ATTGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG420	`TTGGGCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
REG	`GGGCCCAATA`		-	2422228	2422237	-482	-491
	AtREG392	`GGGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG352	`GGCCCAAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG355	`GCCCAATA`		PPDB Motif	`GCCCA`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak T 4 + 2422324 AT1G07830.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`T`	4	+	2422324	AT1G07830.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone + 2422241 AT1G07830.1

TSS clone T clone + 2422292 AT1G07830.1

TSS clone A clone + 2422298 AT1G07830.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	+	2422241	AT1G07830.1
TSS clone	`T`	clone	+	2422292	AT1G07830.1
TSS clone	`A`	clone	+	2422298	AT1G07830.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTCTCCTCTCTCT + 2422332 2422344 AT1G07830.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTCTCCTCTCTCT`	+	2422332	2422344	AT1G07830.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG GATGACGTGGAT + 2422063 2422074 AT1G07830.1

AtREG578 GATGACGT     ABA PPDB Motif ACGT PLACE Motif ACGT

AtREG483 ATGACGTG    PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG419   TGACGTGG   PPDB Motif ACGT PLACE Motif ACGT, ACGTG, TGACGTGG, CCACGTCA

AtREG547     ACGTGGAT ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

REG ATTAGGCCTTAA + 2422165 2422176 AT1G07830.1

AtREG506 ATTAGGCC     PPDB Motif PLACE Motif

AtREG416     GGCCTTAA PPDB Motif PLACE Motif

REG TGGCCCAATAA + 2422193 2422203 AT1G07830.1

AtREG420 TGGCCCAA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG352 GGCCCAAT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG355   GCCCAATA PPDB Motif GCCCA PLACE Motif

AtREG417    CCCAATAA PPDB Motif GCCCA PLACE Motif

REG TATTGGGCCCTA + 2422228 2422239 AT1G07830.1

AtREG355 TATTGGGC     PPDB Motif GCCCA PLACE Motif

AtREG352 ATTGGGCC    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG392   TTGGGCCC   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG400    TGGGCCCT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG387     GGGCCCTA PPDB Motif GCCCA PLACE Motif GGGCC