Summary of Gene (AT1G07820.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT1G07820.1 5'->3' (-) Promoter sequence AT1G07830.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | - | 2421944 | -198 |
TSS clone peak | C | clone | - | 2421943 | -197 |
TSS clone peak | G | clone | - | 2421941 | -195 |
TSS clone | T | clone | - | 2421940 | -194 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TTTATATATT | - | 2421969 | 2421978 | -223 | -232 |
Y Patch | TCTTCTTCTTCT | - | 2421888 | 2421899 | -142 | -153 |
Y Patch | TCCTCTCTCC | - | 2421917 | 2421926 | -171 | -180 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ATCCACGTCATC | - | 2422063 | 2422074 | -317 | -328 | |||
AtREG547 | ATCCACGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
AtREG419 | CCACGTCA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA  | ||||
AtREG483 | CACGTCAT | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | ||||
AtREG578 | ACGTCATC | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT  | |||
REG | TTAAGGCCTAAT | - | 2422165 | 2422176 | -419 | -430 | |||
AtREG416 | TTAAGGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG506 | GGCCTAAT | PPDB Motif |   | PLACE Motif |   | ||||
REG | TTATTGGGCCA | - | 2422193 | 2422203 | -447 | -457 | |||
AtREG417 | TTATTGGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG355 | TATTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG352 | ATTGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG420 | TTGGGCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
REG | GGGCCCAATA | - | 2422228 | 2422237 | -482 | -491 | |||
AtREG392 | GGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG352 | GGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG355 | GCCCAATA | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | T | 4 | + | 2422324 | AT1G07830.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | + | 2422241 | AT1G07830.1 |
TSS clone | T | clone | + | 2422292 | AT1G07830.1 |
TSS clone | A | clone | + | 2422298 | AT1G07830.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTCTCCTCTCTCT | + | 2422332 | 2422344 | AT1G07830.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | GATGACGTGGAT | + | 2422063 | 2422074 | AT1G07830.1 | ||||
AtREG578 | GATGACGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT  | |||
AtREG483 | ATGACGTG | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | ||||
AtREG419 | TGACGTGG | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA  | ||||
AtREG547 | ACGTGGAT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
REG | ATTAGGCCTTAA | + | 2422165 | 2422176 | AT1G07830.1 | ||||
AtREG506 | ATTAGGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG416 | GGCCTTAA | PPDB Motif |   | PLACE Motif |   | ||||
REG | TGGCCCAATAA | + | 2422193 | 2422203 | AT1G07830.1 | ||||
AtREG420 | TGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG352 | GGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG355 | GCCCAATA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG417 | CCCAATAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TATTGGGCCCTA | + | 2422228 | 2422239 | AT1G07830.1 | ||||
AtREG355 | TATTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG352 | ATTGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG392 | TTGGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG400 | TGGGCCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG387 | GGGCCCTA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  |