PlantPromoterDB promoter information of AT1G07890.4

Summary of Gene (AT1G07890.4)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G07890 TAIR NCBI
Gene model	AT1G07890.4
Description	Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.

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Overview

Focused view (chromosome 1: 2437005-2438204)

`Genome position from initiation codon` AT1G07890.1 AT1G07890.2 AT1G07890.3 AT1G07890.5 AT1G07890.6 AT1G07890.7 AT1G07890.8 TSS from cDNA TSS information AT1G07890.4 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G07890.4

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 234 + 2437478 -527

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	234	+	2437478	-527

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone T clone + 2437330 -675

TSS clone C clone + 2437426 -579

TSS clone C clone + 2437477 -528

TSS clone A clone + 2437478 -527

TSS clone T clone + 2437479 -526

TSS clone A clone + 2437487 -518

TSS clone G clone + 2437488 -517

TSS clone A clone + 2437490 -515

TSS clone C clone + 2437491 -514

TSS clone A clone + 2437514 -491

TSS clone C clone + 2437515 -490

TSS clone A clone + 2437528 -477

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`T`	clone	+	2437330	-675
TSS clone	`C`	clone	+	2437426	-579
TSS clone	`C`	clone	+	2437477	-528
TSS clone	`A`	clone	+	2437478	-527
TSS clone	`T`	clone	+	2437479	-526
TSS clone	`A`	clone	+	2437487	-518
TSS clone	`G`	clone	+	2437488	-517
TSS clone	`A`	clone	+	2437490	-515
TSS clone	`C`	clone	+	2437491	-514
TSS clone	`A`	clone	+	2437514	-491
TSS clone	`C`	clone	+	2437515	-490
TSS clone	`A`	clone	+	2437528	-477

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box ACTCTATATATT + 2437440 2437451 -565 -554

Y Patch TTTCTTCTCCTC + 2437457 2437468 -548 -537

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`ACTCTATATATT`	+	2437440	2437451	-565	-554
Y Patch	`TTTCTTCTCCTC`	+	2437457	2437468	-548	-537
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TAGTGGGCCCT + 2437208 2437218 -797 -787

AtREG532 TAGTGGGC PPDB Motif GCCCA PLACE Motif

AtREG400 TGGGCCCT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

REG TTAAAGCC + 2437332 2437339 -673 -666

AtREG545 TTAAAGCC PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TAGTGGGCCCT`		+	2437208	2437218	-797	-787
	AtREG532	`TAGTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG400	`TGGGCCCT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
REG	`TTAAAGCC`		+	2437332	2437339	-673	-666
	AtREG545	`TTAAAGCC`		PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None