PlantPromoterDB promoter information of AT1G08105.1
Summary of Gene (AT1G08105.1)
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Overview
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Focused view (chromosome 1: 2535786-2534587)
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Genome position
TSS from cDNA TSS information AT1G08105.1 5'->3' (-) Promoter sequence AT1G08110.1
AT1G08110.2 AT1G08110.3 AT1G08110.4 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G08105.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | G | 31 | + | 2535353 | AT1G08110.1, AT1G08110.2, AT1G08110.3, AT1G08110.4 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | C | clone | + | 2535328 | AT1G08110.1, AT1G08110.2, AT1G08110.3, AT1G08110.4 |
| TSS clone | C | clone | + | 2535351 | AT1G08110.1, AT1G08110.2, AT1G08110.3, AT1G08110.4 |
| TSS clone | C | clone | + | 2535352 | AT1G08110.1, AT1G08110.2, AT1G08110.3, AT1G08110.4 |
| TSS clone | G | clone | + | 2535353 | AT1G08110.1, AT1G08110.2, AT1G08110.3, AT1G08110.4 |
| TSS clone | A | clone | + | 2535354 | AT1G08110.1, AT1G08110.2, AT1G08110.3, AT1G08110.4 |
| TSS clone | G | clone | + | 2535371 | AT1G08110.1, AT1G08110.2, AT1G08110.3, AT1G08110.4 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCTCTCCT | + | 2535391 | 2535400 | AT1G08110.1, AT1G08110.2, AT1G08110.3, AT1G08110.4 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | CCAAACCGGAA | + | 2535230 | 2535240 | AT1G08110.1, AT1G08110.2, AT1G08110.3, AT1G08110.4 | ||||
| AtREG550 | CCAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG496 | CAAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG521 | AAACCGGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG534 | AACCGGAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | AAAACCGGT | + | 2535247 | 2535255 | AT1G08110.1, AT1G08110.2, AT1G08110.3, AT1G08110.4 | ||||
| AtREG542 | AAAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG436 | AAACCGGT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | AACGACGTCGTTTA | + | 2535280 | 2535293 | AT1G08110.1, AT1G08110.2, AT1G08110.3, AT1G08110.4 | ||||
| AtREG493 | AACGACGTCGTT | PPDB Motif | ACGT | PLACE Motif | ACGT | ||||
| AtREG431 | ACGACGTCGT | PPDB Motif | ACGT | PLACE Motif | ACGT | ||||
| AtREG415 | CGTCGTTT | PPDB Motif | PLACE Motif | ||||||
| AtREG565 | GTCGTTTA | PPDB Motif | PLACE Motif | ||||||