PlantPromoterDB promoter information of AT1G08350.1

Summary of Gene (AT1G08350.1)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G08350 TAIR NCBI
Gene model	AT1G08350.1
Description	endomembrane protein 70 family protein; FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion; LOCATED IN: integral to membrane, phragmoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G37310.1); Has 1031 Blast hits to 987 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 444; Fungi - 168; Plants - 231; Viruses - 0; Other Eukaryotes - 188 (source: NCBI BLink).

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Overview

Focused view (chromosome 1: 2636055-2634856)

`Genome position from initiation codon` `AT1G08350.2 TSS from cDNA TSS information AT1G08350.1 5'->3' (-) Promoter sequence AT1G08360.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G08350.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone peak A clone - 2635842 -787

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone peak	`A`	clone	-	2635842	-787

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG AAATGGGC - 2635911 2635918 -856 -863

AtREG386 AAATGGGC PPDB Motif GCCCA PLACE Motif

REG AAAAGCCCAAAC - 2635926 2635937 -871 -882

AtREG409 AAAAGCCC     PPDB Motif GCCCA PLACE Motif

AtREG376 AAAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407   AAGCCCAA   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG469    AGCCCAAA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG474     GCCCAAAC PPDB Motif GCCCA PLACE Motif

REG AATTGGGCCTTTA - 2635947 2635959 -892 -904

AtREG418 AATTGGGC      PPDB Motif GCCCA PLACE Motif

AtREG352 ATTGGGCC     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356   TTGGGCCT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG353    TGGGCCTT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG359     GGGCCTTT PPDB Motif GCCCA PLACE Motif GGGCC

AtREG467      GGCCTTTA PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`AAATGGGC`		-	2635911	2635918	-856	-863
	AtREG386	`AAATGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`AAAAGCCCAAAC`		-	2635926	2635937	-871	-882
	AtREG409	`AAAAGCCC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG376	`AAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG407	`AAGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG469	`AGCCCAAA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG474	`GCCCAAAC`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`AATTGGGCCTTTA`		-	2635947	2635959	-892	-904
	AtREG418	`AATTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG352	`ATTGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG356	`TTGGGCCT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG353	`TGGGCCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG359	`GGGCCTTT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG467	`GGCCTTTA`		PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 107 + 2636036 AT1G08360.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	107	+	2636036	AT1G08360.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone T clone + 2636011 AT1G08360.1

TSS clone G clone + 2636025 AT1G08360.1

TSS clone T clone + 2636028 AT1G08360.1

TSS clone T clone + 2636035 AT1G08360.1

TSS clone G clone + 2636036 AT1G08360.1

TSS clone T clone + 2636037 AT1G08360.1

TSS clone C clone + 2636038 AT1G08360.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`T`	clone	+	2636011	AT1G08360.1
TSS clone	`G`	clone	+	2636025	AT1G08360.1
TSS clone	`T`	clone	+	2636028	AT1G08360.1
TSS clone	`T`	clone	+	2636035	AT1G08360.1
TSS clone	`G`	clone	+	2636036	AT1G08360.1
TSS clone	`T`	clone	+	2636037	AT1G08360.1
TSS clone	`C`	clone	+	2636038	AT1G08360.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box TACTATAAAGG + 2635993 2636003 AT1G08360.1

Y Patch TTTCTTCT + 2636028 2636035 AT1G08360.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`TACTATAAAGG`	+	2635993	2636003	AT1G08360.1
Y Patch	`TTTCTTCT`	+	2636028	2636035	AT1G08360.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG GACGACGTCGT + 2635758 2635768 AT1G08360.1

AtREG526 GACGACGT    PPDB Motif ACGT PLACE Motif ACGT

AtREG431 ACGACGTCGT PPDB Motif ACGT PLACE Motif ACGT

REG AAAGTCAA + 2635777 2635784 AT1G08360.1

AtREG632 AAAGTCAA PPDB Motif PLACE Motif TTGAC

REG GCCCATTT + 2635911 2635918 AT1G08360.1

AtREG386 GCCCATTT PPDB Motif GCCCA PLACE Motif

REG GTTTGGGCTTTT + 2635926 2635937 AT1G08360.1

AtREG474 GTTTGGGC     PPDB Motif GCCCA PLACE Motif

AtREG469 TTTGGGCT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407   TTGGGCTT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG376    TGGGCTTT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG409     GGGCTTTT PPDB Motif GCCCA PLACE Motif

REG TAAAGGCCCAATT + 2635947 2635959 AT1G08360.1

AtREG467 TAAAGGCC      PPDB Motif PLACE Motif

AtREG359 AAAGGCCC     PPDB Motif GCCCA PLACE Motif GGGCC

AtREG353   AAGGCCCA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356    AGGCCCAA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG352     GGCCCAAT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG418      GCCCAATT PPDB Motif GCCCA PLACE Motif