PlantPromoterDB promoter information of AT1G08380
Summary of Gene (AT1G08380)
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Overview
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Focused view (chromosome 1: 2642739-2641540)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G08380 5'->3' (-) Promoter sequence AT1G08390.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G08380
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 172 | - | 2641753 | -14 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 2641794 | -55 |
| TSS clone | T | clone | - | 2641793 | -54 |
| TSS clone | T | clone | - | 2641792 | -53 |
| TSS clone | A | clone | - | 2641790 | -51 |
| TSS clone | C | clone | - | 2641789 | -50 |
| TSS clone | A | clone | - | 2641777 | -38 |
| TSS clone | A | clone | - | 2641773 | -34 |
| TSS clone | G | clone | - | 2641767 | -28 |
| TSS clone | T | clone | - | 2641765 | -26 |
| TSS clone | G | clone | - | 2641763 | -24 |
| TSS clone | G | clone | - | 2641762 | -23 |
| TSS clone | A | clone | - | 2641758 | -19 |
| TSS clone | A | clone | - | 2641757 | -18 |
| TSS clone | G | clone | - | 2641755 | -16 |
| TSS clone | A | clone | - | 2641753 | -14 |
| TSS clone | G | clone | - | 2641752 | -13 |
| TSS clone | A | clone | - | 2641750 | -11 |
| TSS clone | A | clone | - | 2641749 | -10 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGCTTTTT | - | 2642034 | 2642041 | -295 | -302 | |||
| AtREG589 | GGCTTTTT | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||