PlantPromoterDB promoter information of AT1G08430
Summary of Gene (AT1G08430)
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Overview
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Focused view (chromosome 1: 2657800-2658999)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G08430 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G08430
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 4 | + | 2658666 | -134 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 2658716 | -84 |
| TSS clone | A | clone | + | 2658720 | -80 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TTTATAAATA | + | 2658628 | 2658637 | -172 | -163 |
| Y Patch | TCTCTCTT | + | 2658671 | 2658678 | -129 | -122 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACCGGTTCA | + | 2658443 | 2658451 | -357 | -349 | |||
| AtREG528 | ACCGGTTC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG480 | CCGGTTCA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | GCCCAACTTACTGGGC | + | 2658520 | 2658535 | -280 | -265 | |||
| AtREG607 | GCCCAACT | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG434 | TACTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||