PlantPromoterDB promoter information of AT1G08450
Summary of Gene (AT1G08450)
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Overview
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Focused view (chromosome 1: 2672800-2671601)
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Genome position
from initiation codon AT1G08450.2 TSS from cDNA TSS information AT1G08450 5'->3' (-) Promoter sequence AT1G08460.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G08450
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 20 | - | 2671825 | -25 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | - | 2671827 | -27 |
| TSS clone | A | clone | - | 2671825 | -25 |
| TSS clone | T | clone | - | 2671824 | -24 |
| TSS clone | A | clone | - | 2671822 | -22 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TTGCTATAAAGG | - | 2671850 | 2671861 | -50 | -61 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAACGACAC | - | 2671879 | 2671887 | -79 | -87 | |||
| AtREG569 | AAACGACA | PPDB Motif | PLACE Motif | ||||||
| AtREG527 | AACGACAC | DREB1Aox | PPDB Motif | PLACE Motif | |||||
| REG | TAAACGAC | - | 2671994 | 2672001 | -194 | -201 | |||
| AtREG565 | TAAACGAC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 4 | + | 2672499 | AT1G08460.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | T | clone | + | 2672461 | AT1G08460.1 |
| TSS clone | T | clone | + | 2672465 | AT1G08460.1 |
| TSS clone | T | clone | + | 2672468 | AT1G08460.1 |
| TSS clone | A | clone | + | 2672499 | AT1G08460.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | CCAGGCCCAATAAG | + | 2672333 | 2672346 | AT1G08460.1 | ||||
| AtREG619 | CCAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG370 | CAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG356 | AGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG352 | GGCCCAAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG355 | GCCCAATA | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG417 | CCCAATAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG611 | CCAATAAG | PPDB Motif | PLACE Motif | ||||||
| REG | AACACGTGTG | + | 2672435 | 2672444 | AT1G08460.1 | ||||
| AtREG590 | AACACGTG | ABA, JA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG460 | CACGTGTG | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| REG | GCGCGTGA | + | 2672447 | 2672454 | AT1G08460.1 | ||||
| AtREG395 | GCGCGTGA | PPDB Motif | ACGCGC | PLACE Motif | |||||