Summary of Gene (AT1G08490.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT1G08490.1 5'->3' (-) Promoter sequence AT1G08500.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 8 | - | 2688589 | -42 |
TSS peak | G | 8 | - | 2688581 | -34 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | - | 2688589 | -42 |
TSS clone | A | clone | - | 2688586 | -39 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CGTCTTCTCC | - | 2688551 | 2688560 | -4 | -13 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AAAAGGCCTAATTCGGCCCATAT | - | 2688635 | 2688657 | -88 | -110 | |||
AtREG459 | AAAAGGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG506 | GGCCTAAT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG427 | TTCGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG393 | TCGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG380 | CGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG364 | GGCCCATA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG432 | GCCCATAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AGGGCCCATTTA | - | 2688665 | 2688676 | -118 | -129 | |||
AtREG400 | AGGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG391 | GGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG361 | GGCCCATT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG386 | GCCCATTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG443 | CCCATTTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TTTAACCGGTTTG | - | 2688695 | 2688707 | -148 | -160 | |||
AtREG645 | TTTAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  | ||||
AtREG501 | TTAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  | ||||
AtREG503 | TAACCGGT | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  | ||||
AtREG436 | ACCGGTTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG496 | CCGGTTTG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | AGTCGGTTGAACCGGT | - | 2688709 | 2688724 | -162 | -177 | |||
AtREG641 | AGTCGGTT | PPDB Motif | AACCG(G/A), CCGAC  | PLACE Motif | CCGAC, RCCGAC  | ||||
AtREG640 | TTGAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG480 | TGAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG528 | GAACCGGT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | A | clone | + | 2689016 | AT1G08500.1 |
TSS clone peak | A | clone | + | 2689068 | AT1G08500.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |