PlantPromoterDB promoter information of AT1G08490.1

Summary of Gene (AT1G08490.1)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G08490 TAIR NCBI
Gene model	AT1G08490.1
Description	Chloroplastic NifS-like protein that can catalyze the conversion of cysteine into alanine and elemental sulfur (S(0)) and of selenocysteine into alanine and elemental Se (Se(0)). Overexpression enhances selenium tolerance and accumulation.

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Overview

Focused view (chromosome 1: 2689547-2688348)

`Genome position from initiation codon` `TSS from cDNA TSS information AT1G08490.1 5'->3' (-) Promoter sequence AT1G08500.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G08490.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 8 - 2688589 -42

TSS peak G 8 - 2688581 -34

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	8	-	2688589	-42
TSS peak	`G`	8	-	2688581	-34

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone G clone - 2688589 -42

TSS clone A clone - 2688586 -39

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`G`	clone	-	2688589	-42
TSS clone	`A`	clone	-	2688586	-39

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CGTCTTCTCC - 2688551 2688560 -4 -13

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CGTCTTCTCC`	-	2688551	2688560	-4	-13
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG AAAAGGCCTAATTCGGCCCATAT - 2688635 2688657 -88 -110

AtREG459 AAAAGGCC                PPDB Motif PLACE Motif

AtREG506     GGCCTAAT            PPDB Motif PLACE Motif

AtREG427            TTCGGCCC     PPDB Motif GCCCA PLACE Motif GGGCC

AtREG393             TCGGCCCA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG380              CGGCCCAT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG364               GGCCCATA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG432                GCCCATAT PPDB Motif GCCCA PLACE Motif

REG AGGGCCCATTTA - 2688665 2688676 -118 -129

AtREG400 AGGGCCCA     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG391 GGGCCCAT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG361   GGCCCATT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG386    GCCCATTT PPDB Motif GCCCA PLACE Motif

AtREG443     CCCATTTA PPDB Motif GCCCA PLACE Motif

REG TTTAACCGGTTTG - 2688695 2688707 -148 -160

AtREG645 TTTAACCG      PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG501 TTAACCGG     PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG503   TAACCGGT    PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG436     ACCGGTTT PPDB Motif AACCG(G/A) PLACE Motif

AtREG496      CCGGTTTG PPDB Motif AACCG(G/A) PLACE Motif

REG AGTCGGTTGAACCGGT - 2688709 2688724 -162 -177

AtREG641 AGTCGGTT         PPDB Motif AACCG(G/A), CCGAC PLACE Motif CCGAC, RCCGAC

AtREG640       TTGAACCG   PPDB Motif AACCG(G/A) PLACE Motif

AtREG480        TGAACCGG PPDB Motif AACCG(G/A) PLACE Motif

AtREG528         GAACCGGT PPDB Motif AACCG(G/A) PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`AAAAGGCCTAATTCGGCCCATAT`		-	2688635	2688657	-88	-110
	AtREG459	`AAAAGGCC`		PPDB Motif		PLACE Motif
	AtREG506	`GGCCTAAT`		PPDB Motif		PLACE Motif
	AtREG427	`TTCGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG393	`TCGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG380	`CGGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG364	`GGCCCATA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG432	`GCCCATAT`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`AGGGCCCATTTA`		-	2688665	2688676	-118	-129
	AtREG400	`AGGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG391	`GGGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG361	`GGCCCATT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG386	`GCCCATTT`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG443	`CCCATTTA`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`TTTAACCGGTTTG`		-	2688695	2688707	-148	-160
	AtREG645	`TTTAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif	`CNGTTR`
	AtREG501	`TTAACCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif	`CNGTTR`
	AtREG503	`TAACCGGT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif	`CNGTTR`
	AtREG436	`ACCGGTTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG496	`CCGGTTTG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`AGTCGGTTGAACCGGT`		-	2688709	2688724	-162	-177
	AtREG641	`AGTCGGTT`		PPDB Motif	`AACCG(G/A), CCGAC`	PLACE Motif	`CCGAC, RCCGAC`
	AtREG640	`TTGAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG480	`TGAACCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG528	`GAACCGGT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone peak A clone + 2689016 AT1G08500.1

TSS clone peak A clone + 2689068 AT1G08500.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone peak	`A`	clone	+	2689016	AT1G08500.1
TSS clone peak	`A`	clone	+	2689068	AT1G08500.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None