Summary of Gene (AT1G08900.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT1G08900.1 5'->3' (+) Promoter sequence AT1G08880.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 2852454 | -24 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CACCCCAC | + | 2852292 | 2852299 | -186 | -179 | |||
AtREG618 | CACCCCAC | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 146 | - | 2847778 | AT1G08880.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | C | clone | - | 2847779 | AT1G08880.1 |
TSS clone | A | clone | - | 2847778 | AT1G08880.1 |
TSS clone | C | clone | - | 2847777 | AT1G08880.1 |
TSS clone | A | clone | - | 2847774 | AT1G08880.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | ATATAGAG | - | 2847800 | 2847807 | AT1G08880.1 | |
Y Patch | TTCTCTTC | - | 2847732 | 2847739 | AT1G08880.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | CTGCCACGT | - | 2847865 | 2847873 | AT1G08880.1 | ||||
AtREG468 | CTGCCACG | ABA | PPDB Motif |   | PLACE Motif | GCCAC  | |||
AtREG379 | TGCCACGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  |