PlantPromoterDB promoter information of AT1G08920.2

Summary of Gene (AT1G08920.2)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G08920 TAIR NCBI
Gene model	AT1G08920.2
Description	sugar transporter, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Phosphopantetheine attachment site (InterPro:IPR006162), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ERD6 (EARLY RESPONSE TO DEHYDRATION 6); carbohydrate transmembrane transporter/ sugar transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT1G08930.2); Has 14684 Blast hits to 14344 proteins in 1042 species: Archae - 183; Bacteria - 4689; Metazoa - 3670; Fungi - 3962; Plants - 1292; Viruses - 0; Other Eukaryotes - 888 (source: NCBI BLink).

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Overview

Focused view (chromosome 1: 2881446-2882645)

`Genome position from initiation codon` `AT1G08960.1 AT1G08970.1 AT1G08970.2 AT1G08970.3 AT1G08970.4 TSS from cDNA TSS information AT1G08920.2 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G08920.2

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone peak A clone + 2867268 -178

TSS clone peak T clone + 2867352 -94

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone peak	`A`	clone	+	2867268	-178
TSS clone peak	`T`	clone	+	2867352	-94

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box AATATAAATC + 2867320 2867329 -126 -117

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`AATATAAATC`	+	2867320	2867329	-126	-117
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG ACGTGACA + 2867257 2867264 -189 -182

AtREG606 ACGTGACA ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`ACGTGACA`		+	2867257	2867264	-189	-182
	AtREG606	`ACGTGACA`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak T 4 + 2882565 AT1G08970.4, AT1G08970.1, AT1G08970.3, AT1G08970.2

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`T`	4	+	2882565	AT1G08970.4, AT1G08970.1, AT1G08970.3, AT1G08970.2

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone T clone + 2882524 AT1G08970.4, AT1G08970.1, AT1G08970.3, AT1G08970.2

TSS clone T clone + 2882526 AT1G08970.4, AT1G08970.1, AT1G08970.3, AT1G08970.2

TSS clone A clone + 2882531 AT1G08970.4, AT1G08970.1, AT1G08970.3, AT1G08970.2

TSS clone A clone + 2882532 AT1G08970.4, AT1G08970.1, AT1G08970.3, AT1G08970.2

TSS clone T clone + 2882544 AT1G08970.4, AT1G08970.1, AT1G08970.3, AT1G08970.2

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`T`	clone	+	2882524	AT1G08970.4, AT1G08970.1, AT1G08970.3, AT1G08970.2
TSS clone	`T`	clone	+	2882526	AT1G08970.4, AT1G08970.1, AT1G08970.3, AT1G08970.2
TSS clone	`A`	clone	+	2882531	AT1G08970.4, AT1G08970.1, AT1G08970.3, AT1G08970.2
TSS clone	`A`	clone	+	2882532	AT1G08970.4, AT1G08970.1, AT1G08970.3, AT1G08970.2
TSS clone	`T`	clone	+	2882544	AT1G08970.4, AT1G08970.1, AT1G08970.3, AT1G08970.2

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TTCCTCCTC + 2882534 2882542 AT1G08970.1, AT1G08970.2, AT1G08970.3, AT1G08970.4

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TTCCTCCTC`	+	2882534	2882542	AT1G08970.1, AT1G08970.2, AT1G08970.3, AT1G08970.4
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG ATAAGCCCAATG + 2882463 2882474 AT1G08970.1, AT1G08970.2, AT1G08970.3, AT1G08970.4

AtREG462 ATAAGCCC     PPDB Motif GCCCA PLACE Motif

AtREG426 TAAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407   AAGCCCAA   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG402    AGCCCAAT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG461     GCCCAATG PPDB Motif GCCCA PLACE Motif

REG ACGACACC + 2882481 2882488 AT1G08970.1, AT1G08970.2, AT1G08970.3, AT1G08970.4

AtREG599 ACGACACC PPDB Motif PLACE Motif