Summary of Gene (AT1G08920.2)
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Overview |
Genome position
from initiation codon AT1G08970.2 AT1G08970.3 AT1G08970.4 TSS from cDNA TSS information AT1G08920.2 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 2867268 | -178 |
TSS clone peak | T | clone | + | 2867352 | -94 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | AATATAAATC | + | 2867320 | 2867329 | -126 | -117 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ACGTGACA | + | 2867257 | 2867264 | -189 | -182 | |||
AtREG606 | ACGTGACA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | T | 4 | + | 2882565 | AT1G08970.4, AT1G08970.1, AT1G08970.3, AT1G08970.2 |
TSS peak | G | 2 | + | 2883736 | AT1G08980.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | GGGCCTGT | + | 2883469 | 2883476 | AT1G08980.1 | ||||
AtREG433 | GGGCCTGT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  |