Summary of Gene (AT1G08930.2)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AT1G08970.2 AT1G08970.3 AT1G08970.4 TSS from cDNA TSS information AT1G08930.2 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 8 | + | 2873482 | -122 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 2873465 | -139 |
TSS clone | A | clone | + | 2873494 | -110 |
TSS clone | A | clone | + | 2873547 | -57 |
TSS clone | A | clone | + | 2873548 | -56 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTCTTCTT | + | 2873496 | 2873503 | -108 | -101 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ATGACGTGT | + | 2873385 | 2873393 | -219 | -211 | |||
AtREG483 | ATGACGTG | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | ||||
AtREG517 | TGACGTGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | T | 4 | + | 2882565 | AT1G08970.4, AT1G08970.1, AT1G08970.3, AT1G08970.2 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | T | clone | + | 2882524 | AT1G08970.4, AT1G08970.1, AT1G08970.3, AT1G08970.2 |
TSS clone | T | clone | + | 2882526 | AT1G08970.4, AT1G08970.1, AT1G08970.3, AT1G08970.2 |
TSS clone | A | clone | + | 2882531 | AT1G08970.4, AT1G08970.1, AT1G08970.3, AT1G08970.2 |
TSS clone | A | clone | + | 2882532 | AT1G08970.4, AT1G08970.1, AT1G08970.3, AT1G08970.2 |
TSS clone | T | clone | + | 2882544 | AT1G08970.4, AT1G08970.1, AT1G08970.3, AT1G08970.2 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTCCTCCTC | + | 2882534 | 2882542 | AT1G08970.1, AT1G08970.2, AT1G08970.3, AT1G08970.4 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | ATAAGCCCAATG | + | 2882463 | 2882474 | AT1G08970.1, AT1G08970.2, AT1G08970.3, AT1G08970.4 | ||||
AtREG462 | ATAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG426 | TAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | AAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG402 | AGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG461 | GCCCAATG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | ACGACACC | + | 2882481 | 2882488 | AT1G08970.1, AT1G08970.2, AT1G08970.3, AT1G08970.4 | ||||
AtREG599 | ACGACACC | PPDB Motif |   | PLACE Motif |   | ||||
REG | GGGCCTGT | + | 2883469 | 2883476 | AT1G08980.1 | ||||
AtREG433 | GGGCCTGT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  |